Hb_000567_170

Information

Type -
Description -
Location Contig567: 196469-211023
Sequence    

Annotation

kegg
ID rcu:RCOM_1015010
description catalytic, putative
nr
ID XP_012091765.1
description PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
swissprot
ID Q08448
description Putative lipase YOR059C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR059C PE=1 SV=1
trembl
ID A0A067JBA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21562 PE=4 SV=1
Gene Ontology
ID GO:0016787
description lipase ydr444w isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49120: 196476-204662 , PASA_asmbl_49121: 207336-211009
cDNA
(Sanger)
(ID:Location)		 035_O05.ab1: 196571-196783 , 048_F09.ab1: 196723-201210

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_170 0.0 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
2 Hb_000212_260 0.0784706534 - - acyl-carrier-protein [Triadica sebifera]
3 Hb_000069_100 0.0799541928 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001616_060 0.0834079065 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
5 Hb_000028_400 0.0879456344 - - Protein SSU72, putative [Ricinus communis]
6 Hb_006831_030 0.0904564818 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
7 Hb_007021_020 0.0917129629 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
8 Hb_009404_020 0.0921818971 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002660_160 0.0930928375 - - protein binding protein, putative [Ricinus communis]
10 Hb_010172_030 0.0968290604 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
11 Hb_000329_330 0.0986773331 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
12 Hb_000051_040 0.0988505832 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
13 Hb_001160_030 0.0990042258 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
14 Hb_001912_010 0.1018792266 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
15 Hb_010344_040 0.1019067682 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
16 Hb_002028_130 0.1022694746 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
17 Hb_000362_210 0.1032336086 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
18 Hb_003376_130 0.1047138332 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
19 Hb_002097_060 0.1056007968 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_000111_280 0.1061157465 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000567_170 Hb_000567_170 Hb_000212_260 Hb_000212_260 Hb_000567_170--Hb_000212_260 Hb_000069_100 Hb_000069_100 Hb_000567_170--Hb_000069_100 Hb_001616_060 Hb_001616_060 Hb_000567_170--Hb_001616_060 Hb_000028_400 Hb_000028_400 Hb_000567_170--Hb_000028_400 Hb_006831_030 Hb_006831_030 Hb_000567_170--Hb_006831_030 Hb_007021_020 Hb_007021_020 Hb_000567_170--Hb_007021_020 Hb_003376_130 Hb_003376_130 Hb_000212_260--Hb_003376_130 Hb_000212_260--Hb_000069_100 Hb_001912_010 Hb_001912_010 Hb_000212_260--Hb_001912_010 Hb_000648_060 Hb_000648_060 Hb_000212_260--Hb_000648_060 Hb_010172_030 Hb_010172_030 Hb_000212_260--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000212_260--Hb_009851_100 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_000069_100--Hb_006831_030 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_000069_100--Hb_001616_060 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_001575_020 Hb_001575_020 Hb_001616_060--Hb_001575_020 Hb_002078_460 Hb_002078_460 Hb_001616_060--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001616_060--Hb_007382_150 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060 Hb_001080_080 Hb_001080_080 Hb_000028_400--Hb_001080_080 Hb_005590_020 Hb_005590_020 Hb_000028_400--Hb_005590_020 Hb_000221_150 Hb_000221_150 Hb_000028_400--Hb_000221_150 Hb_007575_070 Hb_007575_070 Hb_000028_400--Hb_007575_070 Hb_001248_080 Hb_001248_080 Hb_000028_400--Hb_001248_080 Hb_000398_160 Hb_000398_160 Hb_006831_030--Hb_000398_160 Hb_011245_020 Hb_011245_020 Hb_006831_030--Hb_011245_020 Hb_001935_030 Hb_001935_030 Hb_006831_030--Hb_001935_030 Hb_001268_080 Hb_001268_080 Hb_006831_030--Hb_001268_080 Hb_001006_180 Hb_001006_180 Hb_006831_030--Hb_001006_180 Hb_000362_210 Hb_000362_210 Hb_007021_020--Hb_000362_210 Hb_002660_160 Hb_002660_160 Hb_007021_020--Hb_002660_160 Hb_000051_040 Hb_000051_040 Hb_007021_020--Hb_000051_040 Hb_183963_020 Hb_183963_020 Hb_007021_020--Hb_183963_020 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3171 3.06396 4.62938 4.14645 14.2 18.4515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.5411 44.6257 33.6114 5.33711 4.01694

CAGE analysis