Hb_000028_400

Information

Type -
Description -
Location Contig28: 366029-370944
Sequence    

Annotation

kegg
ID rcu:RCOM_1370030
description Protein SSU72, putative
nr
ID XP_002515629.1
description Protein SSU72, putative [Ricinus communis]
swissprot
ID Q5ZJQ7
description RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1
trembl
ID B9RPG0
description Protein SSU72, putative OS=Ricinus communis GN=RCOM_1370030 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna polymerase ii subunit a c-terminal domain phosphatase ssu72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29212: 366111-370959 , PASA_asmbl_29213: 365913-370952
cDNA
(Sanger)
(ID:Location)		 007_L18.ab1: 366453-370959 , 032_N05.ab1: 368318-370959 , 042_M15.ab1: 368322-370959

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_400 0.0 - - Protein SSU72, putative [Ricinus communis]
2 Hb_001080_080 0.0787957213 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
3 Hb_005590_020 0.0839091827 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
4 Hb_000221_150 0.0863404898 - - -
5 Hb_007575_070 0.0866863963 - - Histone H3.2 [Glycine soja]
6 Hb_000567_170 0.0879456344 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
7 Hb_001248_080 0.0910648922 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
8 Hb_001045_080 0.0917597539 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
9 Hb_001300_270 0.0920003742 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
10 Hb_001268_140 0.092905477 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000085_330 0.0939238017 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
12 Hb_002097_060 0.0953366016 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
13 Hb_000212_260 0.09550727 - - acyl-carrier-protein [Triadica sebifera]
14 Hb_003455_040 0.0963303784 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
15 Hb_001383_060 0.0976715936 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
16 Hb_003376_030 0.0978576584 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
17 Hb_010172_030 0.0984024639 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
18 Hb_001863_400 0.0987735263 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
19 Hb_003927_130 0.100112743 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
20 Hb_002781_020 0.1002554115 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000028_400 Hb_000028_400 Hb_001080_080 Hb_001080_080 Hb_000028_400--Hb_001080_080 Hb_005590_020 Hb_005590_020 Hb_000028_400--Hb_005590_020 Hb_000221_150 Hb_000221_150 Hb_000028_400--Hb_000221_150 Hb_007575_070 Hb_007575_070 Hb_000028_400--Hb_007575_070 Hb_000567_170 Hb_000567_170 Hb_000028_400--Hb_000567_170 Hb_001248_080 Hb_001248_080 Hb_000028_400--Hb_001248_080 Hb_144598_020 Hb_144598_020 Hb_001080_080--Hb_144598_020 Hb_001080_080--Hb_000221_150 Hb_007416_020 Hb_007416_020 Hb_001080_080--Hb_007416_020 Hb_001045_080 Hb_001045_080 Hb_001080_080--Hb_001045_080 Hb_029584_060 Hb_029584_060 Hb_001080_080--Hb_029584_060 Hb_010672_070 Hb_010672_070 Hb_005590_020--Hb_010672_070 Hb_076626_010 Hb_076626_010 Hb_005590_020--Hb_076626_010 Hb_007944_040 Hb_007944_040 Hb_005590_020--Hb_007944_040 Hb_001268_140 Hb_001268_140 Hb_005590_020--Hb_001268_140 Hb_002999_050 Hb_002999_050 Hb_005590_020--Hb_002999_050 Hb_000212_260 Hb_000212_260 Hb_005590_020--Hb_000212_260 Hb_000340_140 Hb_000340_140 Hb_000221_150--Hb_000340_140 Hb_000364_030 Hb_000364_030 Hb_000221_150--Hb_000364_030 Hb_000221_150--Hb_007416_020 Hb_000333_090 Hb_000333_090 Hb_000221_150--Hb_000333_090 Hb_001634_040 Hb_001634_040 Hb_007575_070--Hb_001634_040 Hb_000805_130 Hb_000805_130 Hb_007575_070--Hb_000805_130 Hb_007575_070--Hb_007944_040 Hb_002588_010 Hb_002588_010 Hb_007575_070--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_007575_070--Hb_000062_390 Hb_007575_070--Hb_001045_080 Hb_000567_170--Hb_000212_260 Hb_000069_100 Hb_000069_100 Hb_000567_170--Hb_000069_100 Hb_001616_060 Hb_001616_060 Hb_000567_170--Hb_001616_060 Hb_006831_030 Hb_006831_030 Hb_000567_170--Hb_006831_030 Hb_007021_020 Hb_007021_020 Hb_000567_170--Hb_007021_020 Hb_155764_020 Hb_155764_020 Hb_001248_080--Hb_155764_020 Hb_003398_120 Hb_003398_120 Hb_001248_080--Hb_003398_120 Hb_148930_010 Hb_148930_010 Hb_001248_080--Hb_148930_010 Hb_004724_160 Hb_004724_160 Hb_001248_080--Hb_004724_160 Hb_001998_050 Hb_001998_050 Hb_001248_080--Hb_001998_050 Hb_000563_240 Hb_000563_240 Hb_001248_080--Hb_000563_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1908 9.51502 9.18691 9.73872 18.5813 34.3624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.9721 87.4624 41.1549 9.38168 8.68498

CAGE analysis