Hb_000398_160

Information

Type -
Description -
Location Contig398: 237377-243415
Sequence    

Annotation

kegg
ID rcu:RCOM_0182690
description GDP-mannose transporter, putative
nr
ID XP_002522842.1
description GDP-mannose transporter, putative [Ricinus communis]
swissprot
ID Q941R4
description GDP-mannose transporter GONST1 OS=Arabidopsis thaliana GN=GONST1 PE=1 SV=2
trembl
ID B9SA23
description GDP-mannose transporter, putative OS=Ricinus communis GN=RCOM_0182690 PE=4 SV=1
Gene Ontology
ID GO:0005458
description gdp-mannose transporter gonst1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39674: 241351-243304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_160 0.0 - - GDP-mannose transporter, putative [Ricinus communis]
2 Hb_006831_030 0.0711623341 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
3 Hb_004041_040 0.082520645 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
4 Hb_000272_070 0.0835424844 - - snare protein YKt [Hevea brasiliensis]
5 Hb_000069_100 0.0852936023 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001006_180 0.087270057 - - PREDICTED: endonuclease V-like [Jatropha curcas]
7 Hb_003929_120 0.0894368327 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
8 Hb_001427_230 0.0918298544 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001545_060 0.0964499796 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
10 Hb_001762_060 0.0969361935 - - pantothenate kinase, putative [Ricinus communis]
11 Hb_001935_030 0.0977525951 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000224_090 0.0980860536 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
13 Hb_000722_040 0.1001865019 - - -
14 Hb_003938_180 0.1057978465 - - lesion inducing family protein [Populus trichocarpa]
15 Hb_000922_100 0.1062000327 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
16 Hb_012423_050 0.107383678 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
17 Hb_003561_030 0.1088429917 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
18 Hb_001232_140 0.1111253863 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
19 Hb_006573_220 0.1116706127 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
20 Hb_000896_120 0.112891005 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]

Gene co-expression network

sample Hb_000398_160 Hb_000398_160 Hb_006831_030 Hb_006831_030 Hb_000398_160--Hb_006831_030 Hb_004041_040 Hb_004041_040 Hb_000398_160--Hb_004041_040 Hb_000272_070 Hb_000272_070 Hb_000398_160--Hb_000272_070 Hb_000069_100 Hb_000069_100 Hb_000398_160--Hb_000069_100 Hb_001006_180 Hb_001006_180 Hb_000398_160--Hb_001006_180 Hb_003929_120 Hb_003929_120 Hb_000398_160--Hb_003929_120 Hb_006831_030--Hb_000069_100 Hb_011245_020 Hb_011245_020 Hb_006831_030--Hb_011245_020 Hb_001935_030 Hb_001935_030 Hb_006831_030--Hb_001935_030 Hb_001268_080 Hb_001268_080 Hb_006831_030--Hb_001268_080 Hb_006831_030--Hb_001006_180 Hb_000224_090 Hb_000224_090 Hb_004041_040--Hb_000224_090 Hb_003561_030 Hb_003561_030 Hb_004041_040--Hb_003561_030 Hb_017862_010 Hb_017862_010 Hb_004041_040--Hb_017862_010 Hb_004041_040--Hb_000272_070 Hb_004041_040--Hb_000069_100 Hb_006573_220 Hb_006573_220 Hb_000272_070--Hb_006573_220 Hb_001687_040 Hb_001687_040 Hb_000272_070--Hb_001687_040 Hb_000272_070--Hb_000069_100 Hb_000272_070--Hb_003561_030 Hb_003938_180 Hb_003938_180 Hb_000272_070--Hb_003938_180 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_000069_100--Hb_006573_220 Hb_001762_060 Hb_001762_060 Hb_001006_180--Hb_001762_060 Hb_024714_060 Hb_024714_060 Hb_001006_180--Hb_024714_060 Hb_012423_050 Hb_012423_050 Hb_001006_180--Hb_012423_050 Hb_162275_030 Hb_162275_030 Hb_001006_180--Hb_162275_030 Hb_001575_020 Hb_001575_020 Hb_003929_120--Hb_001575_020 Hb_003929_120--Hb_000069_100 Hb_003929_120--Hb_001616_060 Hb_007382_150 Hb_007382_150 Hb_003929_120--Hb_007382_150 Hb_003929_120--Hb_003938_180 Hb_003929_120--Hb_000224_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.35098 0.853089 1.47398 7.93894 5.92235 10.0665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.633 31.3291 29.8679 6.40314 2.69628

CAGE analysis