Hb_001935_030

Information

Type -
Description -
Location Contig1935: 17263-21012
Sequence    

Annotation

kegg
ID rcu:RCOM_1609390
description hypothetical protein
nr
ID XP_002511635.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RD46
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19302: 17665-17986 , PASA_asmbl_19303: 18028-20724 , PASA_asmbl_19304: 18820-18950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006831_030 0.0781560775 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
3 Hb_001473_120 0.0870762774 - - Uncharacterized protein isoform 1 [Theobroma cacao]
4 Hb_001329_210 0.0882476098 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
5 Hb_001123_120 0.0921608127 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
6 Hb_002078_460 0.093344014 - - -
7 Hb_000069_100 0.0963411967 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000398_160 0.0977525951 - - GDP-mannose transporter, putative [Ricinus communis]
9 Hb_011245_020 0.1018557927 - - Ferrochelatase [Medicago truncatula]
10 Hb_003929_120 0.1025043776 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
11 Hb_001545_060 0.1041556462 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
12 Hb_007021_020 0.1055928571 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
13 Hb_010172_030 0.1086701238 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
14 Hb_008066_040 0.1087587985 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
15 Hb_001268_080 0.1098612021 - - catalytic, putative [Ricinus communis]
16 Hb_000032_220 0.1102766387 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
17 Hb_017862_010 0.1107812908 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
18 Hb_001213_120 0.111259165 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
19 Hb_007810_030 0.1113876663 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
20 Hb_000722_040 0.1114160078 - - -

Gene co-expression network

sample Hb_001935_030 Hb_001935_030 Hb_006831_030 Hb_006831_030 Hb_001935_030--Hb_006831_030 Hb_001473_120 Hb_001473_120 Hb_001935_030--Hb_001473_120 Hb_001329_210 Hb_001329_210 Hb_001935_030--Hb_001329_210 Hb_001123_120 Hb_001123_120 Hb_001935_030--Hb_001123_120 Hb_002078_460 Hb_002078_460 Hb_001935_030--Hb_002078_460 Hb_000069_100 Hb_000069_100 Hb_001935_030--Hb_000069_100 Hb_006831_030--Hb_000069_100 Hb_000398_160 Hb_000398_160 Hb_006831_030--Hb_000398_160 Hb_011245_020 Hb_011245_020 Hb_006831_030--Hb_011245_020 Hb_001268_080 Hb_001268_080 Hb_006831_030--Hb_001268_080 Hb_001006_180 Hb_001006_180 Hb_006831_030--Hb_001006_180 Hb_001473_120--Hb_001329_210 Hb_001473_120--Hb_001123_120 Hb_007021_020 Hb_007021_020 Hb_001473_120--Hb_007021_020 Hb_002660_160 Hb_002660_160 Hb_001473_120--Hb_002660_160 Hb_010172_030 Hb_010172_030 Hb_001473_120--Hb_010172_030 Hb_001278_050 Hb_001278_050 Hb_001329_210--Hb_001278_050 Hb_001329_210--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001329_210--Hb_007382_150 Hb_002540_030 Hb_002540_030 Hb_001329_210--Hb_002540_030 Hb_007666_020 Hb_007666_020 Hb_001329_210--Hb_007666_020 Hb_000085_330 Hb_000085_330 Hb_001123_120--Hb_000085_330 Hb_017862_010 Hb_017862_010 Hb_001123_120--Hb_017862_010 Hb_148930_010 Hb_148930_010 Hb_001123_120--Hb_148930_010 Hb_001123_120--Hb_010172_030 Hb_000236_460 Hb_000236_460 Hb_001123_120--Hb_000236_460 Hb_002781_020 Hb_002781_020 Hb_001123_120--Hb_002781_020 Hb_001616_060 Hb_001616_060 Hb_002078_460--Hb_001616_060 Hb_002028_130 Hb_002028_130 Hb_002078_460--Hb_002028_130 Hb_002078_460--Hb_001278_050 Hb_002078_460--Hb_007382_150 Hb_000865_070 Hb_000865_070 Hb_002078_460--Hb_000865_070 Hb_000032_220 Hb_000032_220 Hb_002078_460--Hb_000032_220 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_000069_100--Hb_001616_060 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3577 4.05479 2.6137 11.4699 15.1983 30.2626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.8471 79.2145 64.1787 14.4095 1.86951

CAGE analysis