Hb_002028_130

Information

Type -
Description -
Location Contig2028: 153545-156039
Sequence    

Annotation

kegg
ID rcu:RCOM_0708200
description transmembrane protein 14, putative
nr
ID XP_012077153.1
description PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
swissprot
ID Q94A32
description Protein FATTY ACID EXPORT 2, chloroplastic OS=Arabidopsis thaliana GN=FAX2 PE=2 SV=1
trembl
ID A0A067KCP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07567 PE=4 SV=1
Gene Ontology
ID GO:0016021
description upf0136 membrane protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20757: 153549-155822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_130 0.0 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
2 Hb_001718_100 0.0749738659 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
3 Hb_002716_070 0.0762029856 - - PREDICTED: protein ABIL2 [Jatropha curcas]
4 Hb_002078_460 0.077923666 - - -
5 Hb_001616_060 0.0815266066 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
6 Hb_000030_100 0.0819987008 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
7 Hb_001862_100 0.0832153418 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
8 Hb_001173_040 0.0850174416 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_001258_080 0.0870788712 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
10 Hb_000089_160 0.0881738346 - - 60S ribosomal protein L5B [Hevea brasiliensis]
11 Hb_000865_070 0.0892244676 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
12 Hb_000086_570 0.0905125827 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
13 Hb_000046_110 0.0905392123 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
14 Hb_001427_120 0.0917008966 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
15 Hb_001829_060 0.0939144499 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
16 Hb_008289_060 0.0947416973 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
17 Hb_001109_020 0.095060697 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003927_130 0.0956268263 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
19 Hb_000751_130 0.0977265361 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
20 Hb_003938_180 0.0978569856 - - lesion inducing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002028_130 Hb_002028_130 Hb_001718_100 Hb_001718_100 Hb_002028_130--Hb_001718_100 Hb_002716_070 Hb_002716_070 Hb_002028_130--Hb_002716_070 Hb_002078_460 Hb_002078_460 Hb_002028_130--Hb_002078_460 Hb_001616_060 Hb_001616_060 Hb_002028_130--Hb_001616_060 Hb_000030_100 Hb_000030_100 Hb_002028_130--Hb_000030_100 Hb_001862_100 Hb_001862_100 Hb_002028_130--Hb_001862_100 Hb_001427_120 Hb_001427_120 Hb_001718_100--Hb_001427_120 Hb_071736_020 Hb_071736_020 Hb_001718_100--Hb_071736_020 Hb_002078_450 Hb_002078_450 Hb_001718_100--Hb_002078_450 Hb_000086_570 Hb_000086_570 Hb_001718_100--Hb_000086_570 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_001718_100--Hb_001691_210 Hb_000170_010 Hb_000170_010 Hb_002716_070--Hb_000170_010 Hb_003175_040 Hb_003175_040 Hb_002716_070--Hb_003175_040 Hb_004837_140 Hb_004837_140 Hb_002716_070--Hb_004837_140 Hb_002716_070--Hb_001718_100 Hb_000205_270 Hb_000205_270 Hb_002716_070--Hb_000205_270 Hb_002078_460--Hb_001616_060 Hb_001278_050 Hb_001278_050 Hb_002078_460--Hb_001278_050 Hb_007382_150 Hb_007382_150 Hb_002078_460--Hb_007382_150 Hb_000865_070 Hb_000865_070 Hb_002078_460--Hb_000865_070 Hb_000032_220 Hb_000032_220 Hb_002078_460--Hb_000032_220 Hb_001575_020 Hb_001575_020 Hb_001616_060--Hb_001575_020 Hb_000069_100 Hb_000069_100 Hb_001616_060--Hb_000069_100 Hb_001616_060--Hb_007382_150 Hb_002097_060 Hb_002097_060 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060 Hb_000030_100--Hb_008289_060 Hb_011465_040 Hb_011465_040 Hb_000030_100--Hb_011465_040 Hb_002918_200 Hb_002918_200 Hb_000030_100--Hb_002918_200 Hb_000030_100--Hb_000089_160 Hb_003226_280 Hb_003226_280 Hb_000030_100--Hb_003226_280 Hb_001109_020 Hb_001109_020 Hb_000030_100--Hb_001109_020 Hb_003938_180 Hb_003938_180 Hb_001862_100--Hb_003938_180 Hb_001829_060 Hb_001829_060 Hb_001862_100--Hb_001829_060 Hb_001141_280 Hb_001141_280 Hb_001862_100--Hb_001141_280 Hb_001862_100--Hb_001109_020 Hb_000046_110 Hb_000046_110 Hb_001862_100--Hb_000046_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.574 10.6065 5.05885 14.2152 44.9367 65.2771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.2056 101.296 91.3415 25.9636 12.6174

CAGE analysis