Hb_001278_050

Information

Type -
Description -
Location Contig1278: 80062-82676
Sequence    

Annotation

kegg
ID rcu:RCOM_0576890
description ATP binding protein, putative
nr
ID XP_012075721.1
description PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09308 PE=4 SV=1
Gene Ontology
ID GO:0044424
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08547: 79995-82733
cDNA
(Sanger)
(ID:Location)		 022_I16.ab1: 79995-80676 , 040_L14.ab1: 80066-80864

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001278_050 0.0 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
2 Hb_001329_210 0.072591394 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
3 Hb_002078_460 0.082158497 - - -
4 Hb_002936_050 0.0974729178 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
5 Hb_000032_220 0.1041397778 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
6 Hb_007666_020 0.1063307828 - - alkaline phytoceramidase, putative [Ricinus communis]
7 Hb_002897_060 0.1116986059 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
8 Hb_007382_150 0.1124841713 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
9 Hb_001935_030 0.113716324 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000162_140 0.1137788668 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
11 Hb_001616_060 0.1148009937 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
12 Hb_001213_120 0.1159413071 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
13 Hb_003929_120 0.1188320491 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
14 Hb_009265_060 0.1205959236 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
15 Hb_001762_060 0.1209697076 - - pantothenate kinase, putative [Ricinus communis]
16 Hb_003943_030 0.1221656905 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
17 Hb_003504_020 0.1243067038 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
18 Hb_003147_050 0.1258270224 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_006831_030 0.1263685413 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
20 Hb_000032_040 0.127152976 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]

Gene co-expression network

sample Hb_001278_050 Hb_001278_050 Hb_001329_210 Hb_001329_210 Hb_001278_050--Hb_001329_210 Hb_002078_460 Hb_002078_460 Hb_001278_050--Hb_002078_460 Hb_002936_050 Hb_002936_050 Hb_001278_050--Hb_002936_050 Hb_000032_220 Hb_000032_220 Hb_001278_050--Hb_000032_220 Hb_007666_020 Hb_007666_020 Hb_001278_050--Hb_007666_020 Hb_002897_060 Hb_002897_060 Hb_001278_050--Hb_002897_060 Hb_001935_030 Hb_001935_030 Hb_001329_210--Hb_001935_030 Hb_001329_210--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001329_210--Hb_007382_150 Hb_002540_030 Hb_002540_030 Hb_001329_210--Hb_002540_030 Hb_001329_210--Hb_007666_020 Hb_001616_060 Hb_001616_060 Hb_002078_460--Hb_001616_060 Hb_002028_130 Hb_002028_130 Hb_002078_460--Hb_002028_130 Hb_002078_460--Hb_007382_150 Hb_000865_070 Hb_000865_070 Hb_002078_460--Hb_000865_070 Hb_002078_460--Hb_000032_220 Hb_042729_010 Hb_042729_010 Hb_002936_050--Hb_042729_010 Hb_000419_040 Hb_000419_040 Hb_002936_050--Hb_000419_040 Hb_000003_840 Hb_000003_840 Hb_002936_050--Hb_000003_840 Hb_012522_030 Hb_012522_030 Hb_002936_050--Hb_012522_030 Hb_002936_050--Hb_002897_060 Hb_001396_220 Hb_001396_220 Hb_000032_220--Hb_001396_220 Hb_015934_020 Hb_015934_020 Hb_000032_220--Hb_015934_020 Hb_002387_060 Hb_002387_060 Hb_000032_220--Hb_002387_060 Hb_183963_020 Hb_183963_020 Hb_000032_220--Hb_183963_020 Hb_002352_010 Hb_002352_010 Hb_000032_220--Hb_002352_010 Hb_000922_270 Hb_000922_270 Hb_007666_020--Hb_000922_270 Hb_005618_040 Hb_005618_040 Hb_007666_020--Hb_005618_040 Hb_007666_020--Hb_002540_030 Hb_002527_070 Hb_002527_070 Hb_007666_020--Hb_002527_070 Hb_001711_030 Hb_001711_030 Hb_007666_020--Hb_001711_030 Hb_002411_200 Hb_002411_200 Hb_007666_020--Hb_002411_200 Hb_002392_040 Hb_002392_040 Hb_002897_060--Hb_002392_040 Hb_004882_020 Hb_004882_020 Hb_002897_060--Hb_004882_020 Hb_000983_100 Hb_000983_100 Hb_002897_060--Hb_000983_100 Hb_003943_030 Hb_003943_030 Hb_002897_060--Hb_003943_030 Hb_003151_050 Hb_003151_050 Hb_002897_060--Hb_003151_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
235.248 105.267 16.182 61.6804 159.446 252.448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
740.801 584.938 750.597 149.492 34.23

CAGE analysis