Hb_042729_010

Information

Type -
Description -
Location Contig42729: 24794-26216
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042729_010 0.0 - - -
2 Hb_004206_030 0.0915811588 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
3 Hb_002936_050 0.0943382546 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
4 Hb_000934_030 0.1136332384 - - -
5 Hb_012725_110 0.1144322617 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
6 Hb_000419_040 0.1259378204 - - chorismate synthase [Hevea brasiliensis]
7 Hb_000003_840 0.1265346165 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
8 Hb_005618_040 0.1268751417 - - -
9 Hb_000085_300 0.1285340583 - - -
10 Hb_001278_050 0.1311002136 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
11 Hb_000032_220 0.1329253995 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
12 Hb_001213_120 0.1353317188 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
13 Hb_002897_060 0.1359972613 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
14 Hb_003106_140 0.1362860763 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005214_130 0.1373648126 - - -
16 Hb_000363_010 0.1380130277 - - -
17 Hb_001349_010 0.1390105252 - - -
18 Hb_002387_060 0.1392879977 - - conserved hypothetical protein [Ricinus communis]
19 Hb_060668_010 0.1396178602 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
20 Hb_002685_090 0.1396850679 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]

Gene co-expression network

sample Hb_042729_010 Hb_042729_010 Hb_004206_030 Hb_004206_030 Hb_042729_010--Hb_004206_030 Hb_002936_050 Hb_002936_050 Hb_042729_010--Hb_002936_050 Hb_000934_030 Hb_000934_030 Hb_042729_010--Hb_000934_030 Hb_012725_110 Hb_012725_110 Hb_042729_010--Hb_012725_110 Hb_000419_040 Hb_000419_040 Hb_042729_010--Hb_000419_040 Hb_000003_840 Hb_000003_840 Hb_042729_010--Hb_000003_840 Hb_060668_010 Hb_060668_010 Hb_004206_030--Hb_060668_010 Hb_004206_030--Hb_012725_110 Hb_000041_070 Hb_000041_070 Hb_004206_030--Hb_000041_070 Hb_003106_140 Hb_003106_140 Hb_004206_030--Hb_003106_140 Hb_002387_060 Hb_002387_060 Hb_004206_030--Hb_002387_060 Hb_002936_050--Hb_000419_040 Hb_002936_050--Hb_000003_840 Hb_012522_030 Hb_012522_030 Hb_002936_050--Hb_012522_030 Hb_001278_050 Hb_001278_050 Hb_002936_050--Hb_001278_050 Hb_002897_060 Hb_002897_060 Hb_002936_050--Hb_002897_060 Hb_001349_010 Hb_001349_010 Hb_000934_030--Hb_001349_010 Hb_000363_010 Hb_000363_010 Hb_000934_030--Hb_000363_010 Hb_004882_020 Hb_004882_020 Hb_000934_030--Hb_004882_020 Hb_000934_030--Hb_002936_050 Hb_005618_040 Hb_005618_040 Hb_000934_030--Hb_005618_040 Hb_012725_110--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_012725_110--Hb_002685_090 Hb_012725_110--Hb_000041_070 Hb_000836_500 Hb_000836_500 Hb_012725_110--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_012725_110--Hb_002291_030 Hb_000419_040--Hb_012522_030 Hb_009265_060 Hb_009265_060 Hb_000419_040--Hb_009265_060 Hb_001863_480 Hb_001863_480 Hb_000419_040--Hb_001863_480 Hb_171554_080 Hb_171554_080 Hb_000419_040--Hb_171554_080 Hb_000345_030 Hb_000345_030 Hb_000419_040--Hb_000345_030 Hb_000003_840--Hb_002685_090 Hb_143629_090 Hb_143629_090 Hb_000003_840--Hb_143629_090 Hb_080477_050 Hb_080477_050 Hb_000003_840--Hb_080477_050 Hb_000003_840--Hb_012725_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1818 1.94102 0.128947 0.273672 8.37562 7.64925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.7742 18.801 26.7678 6.59938 0.269772

CAGE analysis