Hb_002685_090

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig2685: 95092-96027
Sequence    

Annotation

kegg
ID pop:POPTR_0004s04590g
description POPTRDRAFT_758879; hypothetical protein
nr
ID XP_002305784.1
description hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
swissprot
ID Q84TE9
description Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1
trembl
ID B9H2S7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04590g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27953: 94410-94945
cDNA
(Sanger)
(ID:Location)		 038_A20.ab1: 95852-96282 , 047_J13.ab1: 95852-96282

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_090 0.0 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
2 Hb_000270_410 0.0834553873 - - -
3 Hb_000041_070 0.0933496499 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
4 Hb_015934_020 0.0989043672 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
5 Hb_012725_110 0.1008879227 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
6 Hb_002387_060 0.1039446398 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002936_050 0.1121391778 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
8 Hb_000345_030 0.1146810163 - - REF-like stress related protein 1 [Hevea brasiliensis]
9 Hb_004206_030 0.1169462461 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
10 Hb_012522_030 0.1212880583 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_001213_120 0.1261960481 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
12 Hb_007810_030 0.1286450668 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
13 Hb_010589_040 0.1291258411 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000003_840 0.1306992645 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
15 Hb_000367_280 0.1322416374 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
16 Hb_000419_040 0.1326949542 - - chorismate synthase [Hevea brasiliensis]
17 Hb_002291_030 0.1333874907 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
18 Hb_000078_010 0.1341419603 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
19 Hb_001946_320 0.1352835597 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
20 Hb_054865_130 0.1352960137 - - acyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002685_090 Hb_002685_090 Hb_000270_410 Hb_000270_410 Hb_002685_090--Hb_000270_410 Hb_000041_070 Hb_000041_070 Hb_002685_090--Hb_000041_070 Hb_015934_020 Hb_015934_020 Hb_002685_090--Hb_015934_020 Hb_012725_110 Hb_012725_110 Hb_002685_090--Hb_012725_110 Hb_002387_060 Hb_002387_060 Hb_002685_090--Hb_002387_060 Hb_002936_050 Hb_002936_050 Hb_002685_090--Hb_002936_050 Hb_000270_410--Hb_000041_070 Hb_004206_030 Hb_004206_030 Hb_000270_410--Hb_004206_030 Hb_002000_110 Hb_002000_110 Hb_000270_410--Hb_002000_110 Hb_000270_410--Hb_012725_110 Hb_000032_040 Hb_000032_040 Hb_000270_410--Hb_000032_040 Hb_001741_080 Hb_001741_080 Hb_000041_070--Hb_001741_080 Hb_001514_180 Hb_001514_180 Hb_000041_070--Hb_001514_180 Hb_000041_070--Hb_004206_030 Hb_060668_010 Hb_060668_010 Hb_000041_070--Hb_060668_010 Hb_000041_070--Hb_002387_060 Hb_007810_030 Hb_007810_030 Hb_015934_020--Hb_007810_030 Hb_005000_290 Hb_005000_290 Hb_015934_020--Hb_005000_290 Hb_015934_020--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_015934_020--Hb_000032_220 Hb_000078_010 Hb_000078_010 Hb_015934_020--Hb_000078_010 Hb_012725_110--Hb_004206_030 Hb_012725_110--Hb_002387_060 Hb_012725_110--Hb_000041_070 Hb_000836_500 Hb_000836_500 Hb_012725_110--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_012725_110--Hb_002291_030 Hb_012522_030 Hb_012522_030 Hb_002387_060--Hb_012522_030 Hb_000085_300 Hb_000085_300 Hb_002387_060--Hb_000085_300 Hb_183963_020 Hb_183963_020 Hb_002387_060--Hb_183963_020 Hb_002387_060--Hb_000032_220 Hb_002387_060--Hb_002291_030 Hb_042729_010 Hb_042729_010 Hb_002936_050--Hb_042729_010 Hb_000419_040 Hb_000419_040 Hb_002936_050--Hb_000419_040 Hb_000003_840 Hb_000003_840 Hb_002936_050--Hb_000003_840 Hb_002936_050--Hb_012522_030 Hb_001278_050 Hb_001278_050 Hb_002936_050--Hb_001278_050 Hb_002897_060 Hb_002897_060 Hb_002936_050--Hb_002897_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.3471 2.81128 0.665074 5.83508 36.7738 51.6217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
135.901 99.6034 174.563 8.94914 4.23134

CAGE analysis