Hb_002000_110

Information

Type -
Description -
Location Contig2000: 110357-111031
Sequence    

Annotation

kegg
ID -
description -
nr
ID AAP46158.1
description ASR-like protein 2 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID Q6XNP5
description ASR-like protein 2 OS=Hevea brasiliensis GN=ASRLP2 PE=2 SV=1
Gene Ontology
ID GO:0006950
description asr-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20255: 110286-111003 , PASA_asmbl_20256: 111679-112388 , PASA_asmbl_20257: 110286-112388
cDNA
(Sanger)
(ID:Location)		 002_D16.ab1: 110288-110992 , 003_F15.ab1: 110286-110998 , 005_B19.ab1: 110337-110999 , 012_P09.ab1: 110397-110992 , 013_H12.ab1: 110381-111003 , 015_N03.ab1: 110399-110999 , 026_P19.ab1: 110550-110997 , 027_I04.ab1: 111799-112381 , 031_D08.ab1: 110408-110999 , 034_B14.ab1: 110397-110992 , 034_L04.ab1: 110408-110999 , 038_B06.ab1: 110337-110999 , 039_N10.ab1: 110411-110998 , 042_O07.ab1: 111805-112381 , 043_J09.ab1: 110296-110998 , 052_B05.ab1: 110302-110998

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002000_110 0.0 - - ASR-like protein 2 [Hevea brasiliensis]
2 Hb_075449_050 0.0952549911 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
3 Hb_002235_230 0.1046507802 - - latex abundant protein 1 [Hevea brasiliensis]
4 Hb_004206_030 0.111212564 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
5 Hb_000107_070 0.1125626969 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
6 Hb_012725_110 0.1156372116 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
7 Hb_000270_410 0.1241728891 - - -
8 Hb_001741_090 0.1330106091 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
9 Hb_000041_070 0.1367391722 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
10 Hb_006816_440 0.1376382631 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_003540_230 0.1390564224 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
12 Hb_149683_010 0.143225767 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
13 Hb_042729_010 0.1439486361 - - -
14 Hb_002685_090 0.147645239 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
15 Hb_060668_010 0.1493260345 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
16 Hb_003106_140 0.1516911736 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000419_040 0.1518809981 - - chorismate synthase [Hevea brasiliensis]
18 Hb_000206_220 0.1543692518 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
19 Hb_000178_110 0.1548401177 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001035_040 0.1574391735 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_002000_110 Hb_002000_110 Hb_075449_050 Hb_075449_050 Hb_002000_110--Hb_075449_050 Hb_002235_230 Hb_002235_230 Hb_002000_110--Hb_002235_230 Hb_004206_030 Hb_004206_030 Hb_002000_110--Hb_004206_030 Hb_000107_070 Hb_000107_070 Hb_002000_110--Hb_000107_070 Hb_012725_110 Hb_012725_110 Hb_002000_110--Hb_012725_110 Hb_000270_410 Hb_000270_410 Hb_002000_110--Hb_000270_410 Hb_075449_050--Hb_000107_070 Hb_006018_030 Hb_006018_030 Hb_075449_050--Hb_006018_030 Hb_075449_050--Hb_002235_230 Hb_023214_010 Hb_023214_010 Hb_075449_050--Hb_023214_010 Hb_001741_090 Hb_001741_090 Hb_075449_050--Hb_001741_090 Hb_006816_440 Hb_006816_440 Hb_002235_230--Hb_006816_440 Hb_003540_230 Hb_003540_230 Hb_002235_230--Hb_003540_230 Hb_149683_010 Hb_149683_010 Hb_002235_230--Hb_149683_010 Hb_002235_230--Hb_001741_090 Hb_001741_080 Hb_001741_080 Hb_002235_230--Hb_001741_080 Hb_060668_010 Hb_060668_010 Hb_004206_030--Hb_060668_010 Hb_004206_030--Hb_012725_110 Hb_000041_070 Hb_000041_070 Hb_004206_030--Hb_000041_070 Hb_042729_010 Hb_042729_010 Hb_004206_030--Hb_042729_010 Hb_003106_140 Hb_003106_140 Hb_004206_030--Hb_003106_140 Hb_002387_060 Hb_002387_060 Hb_004206_030--Hb_002387_060 Hb_000107_070--Hb_023214_010 Hb_001035_040 Hb_001035_040 Hb_000107_070--Hb_001035_040 Hb_000107_070--Hb_001741_090 Hb_003020_310 Hb_003020_310 Hb_000107_070--Hb_003020_310 Hb_012725_110--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_012725_110--Hb_002685_090 Hb_012725_110--Hb_000041_070 Hb_000836_500 Hb_000836_500 Hb_012725_110--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_012725_110--Hb_002291_030 Hb_000270_410--Hb_002685_090 Hb_000270_410--Hb_000041_070 Hb_000270_410--Hb_004206_030 Hb_000270_410--Hb_012725_110 Hb_000032_040 Hb_000032_040 Hb_000270_410--Hb_000032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1538.02 23.1984 21.5486 92.4807 414.192 748.044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3911.51 1448.39 2514.82 343.324 17.8449

CAGE analysis