Hb_001035_040

Information

Type -
Description -
Location Contig1035: 51218-69554
Sequence    

Annotation

kegg
ID sot:102581654
description 8-hydroxygeraniol dehydrogenase-like
nr
ID CDP01602.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9ZRF1
description Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1
trembl
ID A0A068TZX3
description Coffea canephora DH200=94 genomic scaffold, scaffold_7 OS=Coffea canephora GN=GSCOC_T00036703001 PE=3 SV=1
Gene Ontology
ID GO:0008270
description probable mannitol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01364: 51170-53825 , PASA_asmbl_01365: 61754-61884 , PASA_asmbl_01366: 61892-63756 , PASA_asmbl_01367: 67877-69513
cDNA
(Sanger)
(ID:Location)		 019_D10.ab1: 51348-53046 , 021_H19.ab1: 51397-53093 , 049_M12.ab1: 51356-52768 , 051_M14.ab1: 51397-52982 , 053_A07.ab1: 51171-52699

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001035_040 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000920_150 0.1101688128 - - annexin [Manihot esculenta]
3 Hb_000107_070 0.111293727 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
4 Hb_004738_010 0.1119127214 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
5 Hb_001741_090 0.1145807017 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
6 Hb_003038_180 0.1155726932 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
7 Hb_148121_010 0.1174413363 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007120_070 0.1233728184 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
9 Hb_003020_310 0.1246663643 - - glycosyltransferase, putative [Ricinus communis]
10 Hb_023214_010 0.1262921014 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
11 Hb_011004_010 0.1313547213 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
12 Hb_000032_040 0.1354143348 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
13 Hb_000907_090 0.1372001288 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
14 Hb_000175_610 0.1385978622 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
15 Hb_000062_580 0.142156682 - - ATP binding protein, putative [Ricinus communis]
16 Hb_007140_020 0.1445755318 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
17 Hb_149683_010 0.1459943019 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
18 Hb_000526_020 0.1461090953 - - thioredoxin-like family protein [Hevea brasiliensis]
19 Hb_026428_010 0.1495787972 - - copper transport protein ATOX1 [Hevea brasiliensis]
20 Hb_002119_120 0.1497094085 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001035_040 Hb_001035_040 Hb_000920_150 Hb_000920_150 Hb_001035_040--Hb_000920_150 Hb_000107_070 Hb_000107_070 Hb_001035_040--Hb_000107_070 Hb_004738_010 Hb_004738_010 Hb_001035_040--Hb_004738_010 Hb_001741_090 Hb_001741_090 Hb_001035_040--Hb_001741_090 Hb_003038_180 Hb_003038_180 Hb_001035_040--Hb_003038_180 Hb_148121_010 Hb_148121_010 Hb_001035_040--Hb_148121_010 Hb_003207_110 Hb_003207_110 Hb_000920_150--Hb_003207_110 Hb_000920_150--Hb_148121_010 Hb_023214_010 Hb_023214_010 Hb_000920_150--Hb_023214_010 Hb_002471_070 Hb_002471_070 Hb_000920_150--Hb_002471_070 Hb_000920_150--Hb_001741_090 Hb_075449_050 Hb_075449_050 Hb_000107_070--Hb_075449_050 Hb_000107_070--Hb_023214_010 Hb_002000_110 Hb_002000_110 Hb_000107_070--Hb_002000_110 Hb_000107_070--Hb_001741_090 Hb_003020_310 Hb_003020_310 Hb_000107_070--Hb_003020_310 Hb_002119_120 Hb_002119_120 Hb_004738_010--Hb_002119_120 Hb_001863_480 Hb_001863_480 Hb_004738_010--Hb_001863_480 Hb_000907_090 Hb_000907_090 Hb_004738_010--Hb_000907_090 Hb_001439_170 Hb_001439_170 Hb_004738_010--Hb_001439_170 Hb_001711_030 Hb_001711_030 Hb_004738_010--Hb_001711_030 Hb_000032_040 Hb_000032_040 Hb_004738_010--Hb_000032_040 Hb_001741_090--Hb_148121_010 Hb_002235_230 Hb_002235_230 Hb_001741_090--Hb_002235_230 Hb_149683_010 Hb_149683_010 Hb_001741_090--Hb_149683_010 Hb_001741_090--Hb_002000_110 Hb_000062_580 Hb_000062_580 Hb_003038_180--Hb_000062_580 Hb_001999_120 Hb_001999_120 Hb_003038_180--Hb_001999_120 Hb_001722_040 Hb_001722_040 Hb_003038_180--Hb_001722_040 Hb_029584_140 Hb_029584_140 Hb_003038_180--Hb_029584_140 Hb_003540_230 Hb_003540_230 Hb_003038_180--Hb_003540_230 Hb_012522_030 Hb_012522_030 Hb_003038_180--Hb_012522_030 Hb_000742_270 Hb_000742_270 Hb_148121_010--Hb_000742_270 Hb_001507_070 Hb_001507_070 Hb_148121_010--Hb_001507_070 Hb_001268_080 Hb_001268_080 Hb_148121_010--Hb_001268_080 Hb_148121_010--Hb_000032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.4642 3.84937 3.26248 19.4921 16.1098 26.0356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
179.553 83.2252 69.5205 12.0569 7.18726

CAGE analysis