Hb_023214_010

Information

Type -
Description -
Location Contig23214: 6726-11516
Sequence    

Annotation

kegg
ID pop:POPTR_0131s00210g
description aberrant lateral root formation 1 family protein
nr
ID XP_006388640.1
description aberrant lateral root formation 1 family protein [Populus trichocarpa]
swissprot
ID Q9LUH2
description MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1
trembl
ID U7DZ93
description MATE efflux family protein OS=Populus trichocarpa GN=POPTR_0131s00210g PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein alf5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24408: 6625-9558 , PASA_asmbl_24409: 10068-10749
cDNA
(Sanger)
(ID:Location)		 012_I07.ab1: 6626-9216

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023214_010 0.0 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
2 Hb_005396_040 0.1029472578 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_000107_070 0.11123688 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
4 Hb_124315_040 0.1177422098 - - hypothetical protein 19 [Hevea brasiliensis]
5 Hb_003020_310 0.1233608736 - - glycosyltransferase, putative [Ricinus communis]
6 Hb_001035_040 0.1262921014 - - unnamed protein product [Coffea canephora]
7 Hb_007120_070 0.1313259947 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
8 Hb_003540_230 0.1351924642 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
9 Hb_000920_150 0.1357522018 - - annexin [Manihot esculenta]
10 Hb_029584_140 0.138793578 - - senescence-associated family protein [Populus trichocarpa]
11 Hb_003207_110 0.1443858333 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
12 Hb_002471_070 0.1495613393 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
13 Hb_000178_110 0.1570204223 - - conserved hypothetical protein [Ricinus communis]
14 Hb_148121_010 0.1579339095 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003038_180 0.1582640643 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
16 Hb_075449_050 0.1590757363 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
17 Hb_009805_010 0.1595921873 - - transcription factor, putative [Ricinus communis]
18 Hb_002235_230 0.1611707742 - - latex abundant protein 1 [Hevea brasiliensis]
19 Hb_001741_090 0.1619221257 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
20 Hb_012799_060 0.1628367795 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_023214_010 Hb_023214_010 Hb_005396_040 Hb_005396_040 Hb_023214_010--Hb_005396_040 Hb_000107_070 Hb_000107_070 Hb_023214_010--Hb_000107_070 Hb_124315_040 Hb_124315_040 Hb_023214_010--Hb_124315_040 Hb_003020_310 Hb_003020_310 Hb_023214_010--Hb_003020_310 Hb_001035_040 Hb_001035_040 Hb_023214_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_023214_010--Hb_007120_070 Hb_005396_040--Hb_124315_040 Hb_003207_110 Hb_003207_110 Hb_005396_040--Hb_003207_110 Hb_002471_070 Hb_002471_070 Hb_005396_040--Hb_002471_070 Hb_002876_030 Hb_002876_030 Hb_005396_040--Hb_002876_030 Hb_012347_010 Hb_012347_010 Hb_005396_040--Hb_012347_010 Hb_075449_050 Hb_075449_050 Hb_000107_070--Hb_075449_050 Hb_000107_070--Hb_001035_040 Hb_002000_110 Hb_002000_110 Hb_000107_070--Hb_002000_110 Hb_001741_090 Hb_001741_090 Hb_000107_070--Hb_001741_090 Hb_000107_070--Hb_003020_310 Hb_124315_040--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_124315_040--Hb_000957_040 Hb_003540_230 Hb_003540_230 Hb_124315_040--Hb_003540_230 Hb_010872_060 Hb_010872_060 Hb_124315_040--Hb_010872_060 Hb_029584_140 Hb_029584_140 Hb_124315_040--Hb_029584_140 Hb_003020_310--Hb_007120_070 Hb_078633_010 Hb_078633_010 Hb_003020_310--Hb_078633_010 Hb_000077_410 Hb_000077_410 Hb_003020_310--Hb_000077_410 Hb_148121_010 Hb_148121_010 Hb_003020_310--Hb_148121_010 Hb_003020_310--Hb_001035_040 Hb_000920_150 Hb_000920_150 Hb_001035_040--Hb_000920_150 Hb_004738_010 Hb_004738_010 Hb_001035_040--Hb_004738_010 Hb_001035_040--Hb_001741_090 Hb_003038_180 Hb_003038_180 Hb_001035_040--Hb_003038_180 Hb_001035_040--Hb_148121_010 Hb_007120_070--Hb_029584_140 Hb_000178_110 Hb_000178_110 Hb_007120_070--Hb_000178_110 Hb_007120_070--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_007120_070--Hb_000062_580 Hb_007120_070--Hb_001035_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.98742 0.0944539 0.130297 1.38583 1.20694 1.44616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.5242 4.1074 4.7684 0.168946 0.104106

CAGE analysis