Hb_010872_060

Information

Type transcription factor
Description TF Family: MYB
Location Contig10872: 36834-38908
Sequence    

Annotation

kegg
ID tcc:TCM_018082
description Duplicated homeodomain-like superfamily protein, putative
nr
ID XP_007032351.1
description Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
swissprot
ID P20025
description Myb-related protein Zm38 OS=Zea mays PE=2 SV=1
trembl
ID A0A061EFX6
description Duplicated homeodomain-like superfamily protein, putative OS=Theobroma cacao GN=TCM_018082 PE=4 SV=1
Gene Ontology
ID GO:0005488
description duplicated homeodomain-like superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02636: 25084-36150 , PASA_asmbl_02637: 36908-38331 , PASA_asmbl_02638: 36931-38548
cDNA
(Sanger)
(ID:Location)		 035_F01.ab1: 36908-38331

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010872_060 0.0 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
2 Hb_012347_010 0.0872591572 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
3 Hb_000957_040 0.0949417196 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
4 Hb_001140_160 0.1081724875 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
5 Hb_001631_070 0.1081944446 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_124315_040 0.10939092 - - hypothetical protein 19 [Hevea brasiliensis]
7 Hb_012799_060 0.1096180647 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_000130_390 0.1183389761 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
9 Hb_000580_170 0.1185514208 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
10 Hb_002027_300 0.1206688009 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
11 Hb_000762_020 0.121838851 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
12 Hb_001315_020 0.1237566012 - - ring finger protein, putative [Ricinus communis]
13 Hb_003540_230 0.1271976549 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
14 Hb_008847_010 0.1364756489 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_003756_010 0.1404431428 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
16 Hb_003018_180 0.1426703028 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
17 Hb_005016_130 0.1443621584 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
18 Hb_006120_200 0.1456751885 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
19 Hb_001741_080 0.1458830852 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
20 Hb_000078_030 0.1465993744 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010872_060 Hb_010872_060 Hb_012347_010 Hb_012347_010 Hb_010872_060--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_010872_060--Hb_000957_040 Hb_001140_160 Hb_001140_160 Hb_010872_060--Hb_001140_160 Hb_001631_070 Hb_001631_070 Hb_010872_060--Hb_001631_070 Hb_124315_040 Hb_124315_040 Hb_010872_060--Hb_124315_040 Hb_012799_060 Hb_012799_060 Hb_010872_060--Hb_012799_060 Hb_002027_300 Hb_002027_300 Hb_012347_010--Hb_002027_300 Hb_012347_010--Hb_000957_040 Hb_012347_010--Hb_124315_040 Hb_012347_010--Hb_001140_160 Hb_000130_390 Hb_000130_390 Hb_012347_010--Hb_000130_390 Hb_000762_020 Hb_000762_020 Hb_000957_040--Hb_000762_020 Hb_000957_040--Hb_001140_160 Hb_000957_040--Hb_000130_390 Hb_000957_040--Hb_002027_300 Hb_001140_160--Hb_000762_020 Hb_004738_090 Hb_004738_090 Hb_001140_160--Hb_004738_090 Hb_003018_180 Hb_003018_180 Hb_001140_160--Hb_003018_180 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310 Hb_001631_070--Hb_000957_040 Hb_001631_070--Hb_000762_020 Hb_001631_070--Hb_012347_010 Hb_001631_070--Hb_124315_040 Hb_003745_010 Hb_003745_010 Hb_001631_070--Hb_003745_010 Hb_124315_040--Hb_000957_040 Hb_003540_230 Hb_003540_230 Hb_124315_040--Hb_003540_230 Hb_005396_040 Hb_005396_040 Hb_124315_040--Hb_005396_040 Hb_029584_140 Hb_029584_140 Hb_124315_040--Hb_029584_140 Hb_000580_170 Hb_000580_170 Hb_012799_060--Hb_000580_170 Hb_000078_030 Hb_000078_030 Hb_012799_060--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_012799_060--Hb_001741_080 Hb_030765_020 Hb_030765_020 Hb_012799_060--Hb_030765_020 Hb_005016_130 Hb_005016_130 Hb_012799_060--Hb_005016_130 Hb_012799_060--Hb_003540_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.3856 0.123906 0.93163 2.29728 7.87516 17.7125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.0608 16.97 21.3964 1.4339 0.645143

CAGE analysis