Hb_003745_010

Information

Type transcription factor
Description TF Family: AP2
Location Contig3745: 3494-8324
Sequence    

Annotation

kegg
ID rcu:RCOM_1317700
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID KDP41049.1
description hypothetical protein JCGZ_03155 [Jatropha curcas]
swissprot
ID Q6X5Y6
description Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1
trembl
ID A0A067LAB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03155 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor wri1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38191: 3913-7175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003745_010 0.0 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
2 Hb_001631_070 0.1315322306 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
3 Hb_019516_040 0.1329308766 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
4 Hb_000130_390 0.1384991786 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
5 Hb_012347_010 0.1438689456 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
6 Hb_003018_180 0.1487305017 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
7 Hb_027751_040 0.1565457243 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
8 Hb_000720_180 0.1575068896 - - -
9 Hb_000957_040 0.162515356 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
10 Hb_124315_040 0.1661500434 - - hypothetical protein 19 [Hevea brasiliensis]
11 Hb_010872_060 0.1679881813 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
12 Hb_001140_160 0.1746472435 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_000707_080 0.1784565155 - - hypothetical protein AALP_AA4G156500, partial [Arabis alpina]
14 Hb_000762_020 0.1787393285 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
15 Hb_000002_390 0.1793036186 - - DNA binding protein, putative [Ricinus communis]
16 Hb_003756_010 0.1840692729 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
17 Hb_001780_060 0.1842876337 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
18 Hb_002027_300 0.1849195053 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
19 Hb_000997_260 0.184997888 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
20 Hb_000510_100 0.1951722682 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003745_010 Hb_003745_010 Hb_001631_070 Hb_001631_070 Hb_003745_010--Hb_001631_070 Hb_019516_040 Hb_019516_040 Hb_003745_010--Hb_019516_040 Hb_000130_390 Hb_000130_390 Hb_003745_010--Hb_000130_390 Hb_012347_010 Hb_012347_010 Hb_003745_010--Hb_012347_010 Hb_003018_180 Hb_003018_180 Hb_003745_010--Hb_003018_180 Hb_027751_040 Hb_027751_040 Hb_003745_010--Hb_027751_040 Hb_010872_060 Hb_010872_060 Hb_001631_070--Hb_010872_060 Hb_000957_040 Hb_000957_040 Hb_001631_070--Hb_000957_040 Hb_000762_020 Hb_000762_020 Hb_001631_070--Hb_000762_020 Hb_001631_070--Hb_012347_010 Hb_124315_040 Hb_124315_040 Hb_001631_070--Hb_124315_040 Hb_000997_260 Hb_000997_260 Hb_019516_040--Hb_000997_260 Hb_000510_100 Hb_000510_100 Hb_019516_040--Hb_000510_100 Hb_019516_040--Hb_000762_020 Hb_001140_160 Hb_001140_160 Hb_019516_040--Hb_001140_160 Hb_000920_140 Hb_000920_140 Hb_019516_040--Hb_000920_140 Hb_000130_390--Hb_003018_180 Hb_000130_390--Hb_000957_040 Hb_002298_040 Hb_002298_040 Hb_000130_390--Hb_002298_040 Hb_000130_390--Hb_012347_010 Hb_000130_390--Hb_001140_160 Hb_005016_130 Hb_005016_130 Hb_000130_390--Hb_005016_130 Hb_002027_300 Hb_002027_300 Hb_012347_010--Hb_002027_300 Hb_012347_010--Hb_000957_040 Hb_012347_010--Hb_010872_060 Hb_012347_010--Hb_124315_040 Hb_012347_010--Hb_001140_160 Hb_003018_180--Hb_001140_160 Hb_003018_180--Hb_000957_040 Hb_003018_180--Hb_002298_040 Hb_004545_150 Hb_004545_150 Hb_003018_180--Hb_004545_150 Hb_001780_060 Hb_001780_060 Hb_003018_180--Hb_001780_060 Hb_002843_190 Hb_002843_190 Hb_027751_040--Hb_002843_190 Hb_027751_030 Hb_027751_030 Hb_027751_040--Hb_027751_030 Hb_012662_010 Hb_012662_010 Hb_027751_040--Hb_012662_010 Hb_001993_020 Hb_001993_020 Hb_027751_040--Hb_001993_020 Hb_003756_010 Hb_003756_010 Hb_027751_040--Hb_003756_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.9688 1.85262 0.51485 0.623413 19.2281 25.5156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.5527 14.6633 21.5409 2.04208 0.339941

CAGE analysis