Hb_001631_070

Information

Type -
Description -
Location Contig1631: 55536-56930
Sequence    

Annotation

kegg
ID rcu:RCOM_2161170
description hypothetical protein
nr
ID XP_012075894.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067KQZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14853: 55538-57007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001631_070 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_010872_060 0.1081944446 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
3 Hb_000957_040 0.1157458666 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
4 Hb_000762_020 0.1167851694 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
5 Hb_012347_010 0.1242469525 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
6 Hb_124315_040 0.1283536607 - - hypothetical protein 19 [Hevea brasiliensis]
7 Hb_003745_010 0.1315322306 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
8 Hb_003540_230 0.1397226008 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
9 Hb_000130_390 0.1418800162 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
10 Hb_001631_080 0.1464522361 - - PREDICTED: importin-5-like [Populus euphratica]
11 Hb_000707_080 0.1471071851 - - hypothetical protein AALP_AA4G156500, partial [Arabis alpina]
12 Hb_000720_180 0.148564398 - - -
13 Hb_001140_160 0.1487251614 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
14 Hb_019516_040 0.150573019 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
15 Hb_005450_010 0.1547077704 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
16 Hb_003018_180 0.1591315003 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
17 Hb_002027_300 0.1641087023 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
18 Hb_000206_220 0.1669659691 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
19 Hb_000510_100 0.1690509418 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
20 Hb_048141_010 0.1691578477 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001631_070 Hb_001631_070 Hb_010872_060 Hb_010872_060 Hb_001631_070--Hb_010872_060 Hb_000957_040 Hb_000957_040 Hb_001631_070--Hb_000957_040 Hb_000762_020 Hb_000762_020 Hb_001631_070--Hb_000762_020 Hb_012347_010 Hb_012347_010 Hb_001631_070--Hb_012347_010 Hb_124315_040 Hb_124315_040 Hb_001631_070--Hb_124315_040 Hb_003745_010 Hb_003745_010 Hb_001631_070--Hb_003745_010 Hb_010872_060--Hb_012347_010 Hb_010872_060--Hb_000957_040 Hb_001140_160 Hb_001140_160 Hb_010872_060--Hb_001140_160 Hb_010872_060--Hb_124315_040 Hb_012799_060 Hb_012799_060 Hb_010872_060--Hb_012799_060 Hb_000957_040--Hb_000762_020 Hb_000957_040--Hb_001140_160 Hb_000957_040--Hb_012347_010 Hb_000130_390 Hb_000130_390 Hb_000957_040--Hb_000130_390 Hb_002027_300 Hb_002027_300 Hb_000957_040--Hb_002027_300 Hb_000762_020--Hb_001140_160 Hb_000184_040 Hb_000184_040 Hb_000762_020--Hb_000184_040 Hb_006120_200 Hb_006120_200 Hb_000762_020--Hb_006120_200 Hb_000762_020--Hb_012347_010 Hb_001017_090 Hb_001017_090 Hb_000762_020--Hb_001017_090 Hb_012347_010--Hb_002027_300 Hb_012347_010--Hb_124315_040 Hb_012347_010--Hb_001140_160 Hb_012347_010--Hb_000130_390 Hb_124315_040--Hb_000957_040 Hb_003540_230 Hb_003540_230 Hb_124315_040--Hb_003540_230 Hb_005396_040 Hb_005396_040 Hb_124315_040--Hb_005396_040 Hb_029584_140 Hb_029584_140 Hb_124315_040--Hb_029584_140 Hb_019516_040 Hb_019516_040 Hb_003745_010--Hb_019516_040 Hb_003745_010--Hb_000130_390 Hb_003745_010--Hb_012347_010 Hb_003018_180 Hb_003018_180 Hb_003745_010--Hb_003018_180 Hb_027751_040 Hb_027751_040 Hb_003745_010--Hb_027751_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
319.411 5.49377 1.1959 20.3787 66.1501 178.402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
394.553 82.7018 168.794 11.7022 3.00912

CAGE analysis