Hb_000184_040

Information

Type rubber biosynthesis
Description Gene Name: Acetyl-CoA acetyltransferase
Location Contig184: 59615-66271
Sequence    

Annotation

kegg
ID egr:104429155
description acetyl-CoA acetyltransferase, cytosolic 1-like
nr
ID XP_010267979.1
description PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
swissprot
ID Q9FIK7
description Probable acetyl-CoA acetyltransferase, cytosolic 2 OS=Arabidopsis thaliana GN=At5g47720 PE=2 SV=1
trembl
ID A0A0A6Z691
description Acetyl-CoA acetyltransferase (Fragment) OS=Euphorbia lathyris PE=2 SV=1
Gene Ontology
ID GO:0016747
description acetyl- cytosolic 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17976: 59591-66190 , PASA_asmbl_17977: 59590-66190
cDNA
(Sanger)
(ID:Location)		 001_C20.ab1: 59591-62908 , 015_M02.ab1: 59590-62793 , 018_J07.ab1: 59591-62878 , 022_L01.ab1: 59591-61344 , 031_J06.ab1: 59591-62906 , 036_G18.ab1: 59591-62791 , 044_F23.ab1: 59591-62885 , 050_M16.ab1: 59591-62773

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_040 0.0 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
2 Hb_001047_010 0.0656044734 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000762_020 0.0928647283 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
4 Hb_004659_120 0.0988277026 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
5 Hb_000481_020 0.1061743382 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
6 Hb_023988_020 0.1082905884 - - PREDICTED: transmembrane protein 19 [Prunus mume]
7 Hb_002235_400 0.1112005354 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
8 Hb_004032_440 0.1113812734 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
9 Hb_005271_170 0.1121551398 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
10 Hb_000282_060 0.1142828035 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
11 Hb_003052_100 0.1202223663 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_006831_010 0.1203141184 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_017434_090 0.1218062092 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001437_040 0.1228496551 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
15 Hb_001017_090 0.1260680591 - - -
16 Hb_023226_090 0.1274968442 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
17 Hb_000510_100 0.1279075818 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_000272_100 0.1285963953 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
19 Hb_003050_230 0.1293480625 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001671_080 0.1306854639 - - amino acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000184_040 Hb_000184_040 Hb_001047_010 Hb_001047_010 Hb_000184_040--Hb_001047_010 Hb_000762_020 Hb_000762_020 Hb_000184_040--Hb_000762_020 Hb_004659_120 Hb_004659_120 Hb_000184_040--Hb_004659_120 Hb_000481_020 Hb_000481_020 Hb_000184_040--Hb_000481_020 Hb_023988_020 Hb_023988_020 Hb_000184_040--Hb_023988_020 Hb_002235_400 Hb_002235_400 Hb_000184_040--Hb_002235_400 Hb_003086_110 Hb_003086_110 Hb_001047_010--Hb_003086_110 Hb_118977_020 Hb_118977_020 Hb_001047_010--Hb_118977_020 Hb_007166_050 Hb_007166_050 Hb_001047_010--Hb_007166_050 Hb_000272_100 Hb_000272_100 Hb_001047_010--Hb_000272_100 Hb_001437_040 Hb_001437_040 Hb_001047_010--Hb_001437_040 Hb_000957_040 Hb_000957_040 Hb_000762_020--Hb_000957_040 Hb_001140_160 Hb_001140_160 Hb_000762_020--Hb_001140_160 Hb_006120_200 Hb_006120_200 Hb_000762_020--Hb_006120_200 Hb_012347_010 Hb_012347_010 Hb_000762_020--Hb_012347_010 Hb_001017_090 Hb_001017_090 Hb_000762_020--Hb_001017_090 Hb_001205_090 Hb_001205_090 Hb_004659_120--Hb_001205_090 Hb_023226_090 Hb_023226_090 Hb_004659_120--Hb_023226_090 Hb_006831_010 Hb_006831_010 Hb_004659_120--Hb_006831_010 Hb_004659_120--Hb_000762_020 Hb_010174_120 Hb_010174_120 Hb_004659_120--Hb_010174_120 Hb_003777_180 Hb_003777_180 Hb_000481_020--Hb_003777_180 Hb_007766_010 Hb_007766_010 Hb_000481_020--Hb_007766_010 Hb_000481_020--Hb_006120_200 Hb_002681_020 Hb_002681_020 Hb_000481_020--Hb_002681_020 Hb_007919_050 Hb_007919_050 Hb_000481_020--Hb_007919_050 Hb_000920_140 Hb_000920_140 Hb_023988_020--Hb_000920_140 Hb_001696_030 Hb_001696_030 Hb_023988_020--Hb_001696_030 Hb_004032_440 Hb_004032_440 Hb_023988_020--Hb_004032_440 Hb_000376_110 Hb_000376_110 Hb_023988_020--Hb_000376_110 Hb_005271_170 Hb_005271_170 Hb_023988_020--Hb_005271_170 Hb_003052_100 Hb_003052_100 Hb_002235_400--Hb_003052_100 Hb_003050_230 Hb_003050_230 Hb_002235_400--Hb_003050_230 Hb_002411_200 Hb_002411_200 Hb_002235_400--Hb_002411_200 Hb_001711_030 Hb_001711_030 Hb_002235_400--Hb_001711_030 Hb_002235_400--Hb_002681_020 Hb_000922_270 Hb_000922_270 Hb_002235_400--Hb_000922_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
204.893 23.3646 11.4778 55.2869 98.6697 174.588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
270.908 97.978 114.72 33.4916 8.12867

CAGE analysis