Hb_001047_010

Information

Type -
Description -
Location Contig1047: 5989-8154
Sequence    

Annotation

kegg
ID rcu:RCOM_0646600
description hypothetical protein
nr
ID XP_002524763.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFJ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0646600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01603: 5859-7914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000184_040 0.0656044734 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
3 Hb_003086_110 0.0816906501 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
4 Hb_118977_020 0.0891661222 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
5 Hb_007166_050 0.0927476278 - - -
6 Hb_000272_100 0.094558859 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
7 Hb_001437_040 0.0951330694 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
8 Hb_000282_060 0.1022910929 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
9 Hb_002400_220 0.103810018 - - Vesicle-associated membrane protein, putative [Ricinus communis]
10 Hb_003086_020 0.1064202801 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
11 Hb_003052_100 0.1084472761 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_034585_030 0.1085659989 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
13 Hb_033491_010 0.11091234 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
14 Hb_159558_030 0.1114827252 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
15 Hb_005271_170 0.1115909495 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
16 Hb_006569_020 0.1128975097 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
17 Hb_000752_060 0.1129632176 - - expressed protein, putative [Ricinus communis]
18 Hb_007919_050 0.1142146332 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
19 Hb_000705_260 0.1162881822 - - conserved hypothetical protein [Ricinus communis]
20 Hb_158092_070 0.1183518988 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001047_010 Hb_001047_010 Hb_000184_040 Hb_000184_040 Hb_001047_010--Hb_000184_040 Hb_003086_110 Hb_003086_110 Hb_001047_010--Hb_003086_110 Hb_118977_020 Hb_118977_020 Hb_001047_010--Hb_118977_020 Hb_007166_050 Hb_007166_050 Hb_001047_010--Hb_007166_050 Hb_000272_100 Hb_000272_100 Hb_001047_010--Hb_000272_100 Hb_001437_040 Hb_001437_040 Hb_001047_010--Hb_001437_040 Hb_000762_020 Hb_000762_020 Hb_000184_040--Hb_000762_020 Hb_004659_120 Hb_004659_120 Hb_000184_040--Hb_004659_120 Hb_000481_020 Hb_000481_020 Hb_000184_040--Hb_000481_020 Hb_023988_020 Hb_023988_020 Hb_000184_040--Hb_023988_020 Hb_002235_400 Hb_002235_400 Hb_000184_040--Hb_002235_400 Hb_003086_110--Hb_007166_050 Hb_003086_020 Hb_003086_020 Hb_003086_110--Hb_003086_020 Hb_003086_110--Hb_118977_020 Hb_003086_110--Hb_000272_100 Hb_003086_110--Hb_001437_040 Hb_000617_320 Hb_000617_320 Hb_003086_110--Hb_000617_320 Hb_118977_020--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_118977_020--Hb_001019_090 Hb_118977_020--Hb_000617_320 Hb_118977_020--Hb_001437_040 Hb_157854_010 Hb_157854_010 Hb_118977_020--Hb_157854_010 Hb_007166_050--Hb_000617_320 Hb_007166_050--Hb_001019_090 Hb_007166_050--Hb_001437_040 Hb_000316_110 Hb_000316_110 Hb_007166_050--Hb_000316_110 Hb_033491_010 Hb_033491_010 Hb_000272_100--Hb_033491_010 Hb_159558_030 Hb_159558_030 Hb_000272_100--Hb_159558_030 Hb_000732_260 Hb_000732_260 Hb_000272_100--Hb_000732_260 Hb_000272_100--Hb_003086_020 Hb_004607_140 Hb_004607_140 Hb_000272_100--Hb_004607_140 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_098709_010 Hb_098709_010 Hb_001437_040--Hb_098709_010 Hb_003453_010 Hb_003453_010 Hb_001437_040--Hb_003453_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
218.68 38.8695 15.4491 65.6146 136.047 234.546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
293.849 145.254 109.275 51.7835 7.26119

CAGE analysis