Hb_002235_400

Information

Type -
Description -
Location Contig2235: 327040-327741
Sequence    

Annotation

kegg
ID pop:POPTR_0004s12110g
description POPTRDRAFT_194941; hypothetical protein
nr
ID XP_011035767.1
description PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
swissprot
ID P0C8Q9
description Uncharacterized protein At5g19025 OS=Arabidopsis thaliana GN=At5g19025 PE=2 SV=3
trembl
ID B9H0C0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s12110g PE=4 SV=2
Gene Ontology
ID GO:0005840
description 60s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_400 0.0 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
2 Hb_003052_100 0.0877725008 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_003050_230 0.0976600794 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002411_200 0.1010777959 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001711_030 0.101456986 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
6 Hb_002681_020 0.1016117032 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_000922_270 0.1045296548 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
8 Hb_001863_480 0.1046775817 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
9 Hb_001671_080 0.1079250833 - - amino acid binding protein, putative [Ricinus communis]
10 Hb_008554_020 0.1088071045 - - -
11 Hb_000184_040 0.1112005354 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
12 Hb_000926_290 0.1119663742 - - conserved hypothetical protein [Ricinus communis]
13 Hb_157022_020 0.1128430125 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
14 Hb_023226_090 0.1138858322 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
15 Hb_003226_150 0.113984905 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
16 Hb_001999_120 0.1147799169 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
17 Hb_000086_570 0.1148900873 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
18 Hb_002681_110 0.1152414052 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
19 Hb_000665_040 0.1168026747 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
20 Hb_092100_020 0.1182755777 - - strictosidine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002235_400 Hb_002235_400 Hb_003052_100 Hb_003052_100 Hb_002235_400--Hb_003052_100 Hb_003050_230 Hb_003050_230 Hb_002235_400--Hb_003050_230 Hb_002411_200 Hb_002411_200 Hb_002235_400--Hb_002411_200 Hb_001711_030 Hb_001711_030 Hb_002235_400--Hb_001711_030 Hb_002681_020 Hb_002681_020 Hb_002235_400--Hb_002681_020 Hb_000922_270 Hb_000922_270 Hb_002235_400--Hb_000922_270 Hb_158092_070 Hb_158092_070 Hb_003052_100--Hb_158092_070 Hb_001195_690 Hb_001195_690 Hb_003052_100--Hb_001195_690 Hb_002078_450 Hb_002078_450 Hb_003052_100--Hb_002078_450 Hb_004657_020 Hb_004657_020 Hb_003052_100--Hb_004657_020 Hb_071736_020 Hb_071736_020 Hb_003052_100--Hb_071736_020 Hb_001671_080 Hb_001671_080 Hb_003052_100--Hb_001671_080 Hb_084849_020 Hb_084849_020 Hb_003050_230--Hb_084849_020 Hb_001369_050 Hb_001369_050 Hb_003050_230--Hb_001369_050 Hb_005686_110 Hb_005686_110 Hb_003050_230--Hb_005686_110 Hb_001437_220 Hb_001437_220 Hb_003050_230--Hb_001437_220 Hb_092100_020 Hb_092100_020 Hb_003050_230--Hb_092100_020 Hb_000061_330 Hb_000061_330 Hb_003050_230--Hb_000061_330 Hb_021650_030 Hb_021650_030 Hb_002411_200--Hb_021650_030 Hb_000086_570 Hb_000086_570 Hb_002411_200--Hb_000086_570 Hb_000091_090 Hb_000091_090 Hb_002411_200--Hb_000091_090 Hb_014720_080 Hb_014720_080 Hb_002411_200--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_002411_200--Hb_001881_020 Hb_020178_070 Hb_020178_070 Hb_002411_200--Hb_020178_070 Hb_001863_480 Hb_001863_480 Hb_001711_030--Hb_001863_480 Hb_000051_040 Hb_000051_040 Hb_001711_030--Hb_000051_040 Hb_012522_030 Hb_012522_030 Hb_001711_030--Hb_012522_030 Hb_002527_070 Hb_002527_070 Hb_001711_030--Hb_002527_070 Hb_001711_030--Hb_000922_270 Hb_001439_170 Hb_001439_170 Hb_001711_030--Hb_001439_170 Hb_001776_110 Hb_001776_110 Hb_002681_020--Hb_001776_110 Hb_002681_020--Hb_003052_100 Hb_004812_010 Hb_004812_010 Hb_002681_020--Hb_004812_010 Hb_000665_040 Hb_000665_040 Hb_002681_020--Hb_000665_040 Hb_004310_030 Hb_004310_030 Hb_002681_020--Hb_004310_030 Hb_008554_020 Hb_008554_020 Hb_002681_020--Hb_008554_020 Hb_003408_020 Hb_003408_020 Hb_000922_270--Hb_003408_020 Hb_007666_020 Hb_007666_020 Hb_000922_270--Hb_007666_020 Hb_010172_070 Hb_010172_070 Hb_000922_270--Hb_010172_070 Hb_000922_270--Hb_000051_040 Hb_000922_270--Hb_014720_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.4837 18.001 7.1645 22.5455 40.9054 62.4566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
148.679 65.3149 84.016 28.7365 8.64833

CAGE analysis