Hb_092100_020

Information

Type -
Description -
Location Contig92100: 8083-28546
Sequence    

Annotation

kegg
ID rcu:RCOM_0158670
description strictosidine synthase, putative (EC:4.3.3.2)
nr
ID XP_002532594.1
description strictosidine synthase, putative [Ricinus communis]
swissprot
ID Q4V3D9
description Protein STRICTOSIDINE SYNTHASE-LIKE 10 OS=Arabidopsis thaliana GN=SSL10 PE=2 SV=1
trembl
ID B9T2X5
description Strictosidine synthase, putative OS=Ricinus communis GN=RCOM_0158670 PE=4 SV=1
Gene Ontology
ID GO:0016844
description strictosidine synthase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62453: 8150-13543 , PASA_asmbl_62454: 12161-12897 , PASA_asmbl_62458: 18738-26868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092100_020 0.0 - - strictosidine synthase, putative [Ricinus communis]
2 Hb_023226_090 0.0561333799 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
3 Hb_001369_050 0.0838600013 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
4 Hb_157022_020 0.093335719 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
5 Hb_084849_020 0.0948216179 - - ARF GTPase activator, putative [Ricinus communis]
6 Hb_003050_230 0.0957309813 - - conserved hypothetical protein [Ricinus communis]
7 Hb_117134_010 0.1012548271 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
8 Hb_148209_120 0.1025692084 - - hypothetical protein CISIN_1g032846mg [Citrus sinensis]
9 Hb_002735_060 0.1049994332 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
10 Hb_001718_100 0.1052721138 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
11 Hb_000172_030 0.1059625778 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
12 Hb_001677_110 0.1071360734 - - Protein YIPF1, putative [Ricinus communis]
13 Hb_071736_020 0.1082475152 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
14 Hb_001235_070 0.1103453314 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005686_110 0.1110703548 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
16 Hb_002352_010 0.1113979551 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
17 Hb_000333_090 0.1119043095 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
18 Hb_006788_070 0.1121771277 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
19 Hb_002716_070 0.114676298 - - PREDICTED: protein ABIL2 [Jatropha curcas]
20 Hb_005398_030 0.1160060657 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_092100_020 Hb_092100_020 Hb_023226_090 Hb_023226_090 Hb_092100_020--Hb_023226_090 Hb_001369_050 Hb_001369_050 Hb_092100_020--Hb_001369_050 Hb_157022_020 Hb_157022_020 Hb_092100_020--Hb_157022_020 Hb_084849_020 Hb_084849_020 Hb_092100_020--Hb_084849_020 Hb_003050_230 Hb_003050_230 Hb_092100_020--Hb_003050_230 Hb_117134_010 Hb_117134_010 Hb_092100_020--Hb_117134_010 Hb_002352_010 Hb_002352_010 Hb_023226_090--Hb_002352_010 Hb_001473_130 Hb_001473_130 Hb_023226_090--Hb_001473_130 Hb_002025_320 Hb_002025_320 Hb_023226_090--Hb_002025_320 Hb_023226_090--Hb_001369_050 Hb_023226_090--Hb_157022_020 Hb_001369_050--Hb_084849_020 Hb_005686_110 Hb_005686_110 Hb_001369_050--Hb_005686_110 Hb_001235_070 Hb_001235_070 Hb_001369_050--Hb_001235_070 Hb_001718_100 Hb_001718_100 Hb_001369_050--Hb_001718_100 Hb_001369_050--Hb_003050_230 Hb_002681_110 Hb_002681_110 Hb_157022_020--Hb_002681_110 Hb_000922_270 Hb_000922_270 Hb_157022_020--Hb_000922_270 Hb_003408_020 Hb_003408_020 Hb_157022_020--Hb_003408_020 Hb_000174_070 Hb_000174_070 Hb_157022_020--Hb_000174_070 Hb_002735_060 Hb_002735_060 Hb_157022_020--Hb_002735_060 Hb_084849_020--Hb_001718_100 Hb_084849_020--Hb_005686_110 Hb_084849_020--Hb_003050_230 Hb_001427_120 Hb_001427_120 Hb_084849_020--Hb_001427_120 Hb_000362_210 Hb_000362_210 Hb_084849_020--Hb_000362_210 Hb_003050_230--Hb_005686_110 Hb_001437_220 Hb_001437_220 Hb_003050_230--Hb_001437_220 Hb_000061_330 Hb_000061_330 Hb_003050_230--Hb_000061_330 Hb_005398_030 Hb_005398_030 Hb_117134_010--Hb_005398_030 Hb_000496_060 Hb_000496_060 Hb_117134_010--Hb_000496_060 Hb_000061_320 Hb_000061_320 Hb_117134_010--Hb_000061_320 Hb_001833_110 Hb_001833_110 Hb_117134_010--Hb_001833_110 Hb_005432_030 Hb_005432_030 Hb_117134_010--Hb_005432_030 Hb_071130_030 Hb_071130_030 Hb_117134_010--Hb_071130_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.425 4.77455 3.96072 14.8729 25.149 47.0914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.6406 37.449 46.5529 11.0907 8.54971

CAGE analysis