Hb_002025_320

Information

Type -
Description -
Location Contig2025: 245030-250343
Sequence    

Annotation

kegg
ID rcu:RCOM_0776150
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012072406.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
swissprot
ID Q38884
description Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2
trembl
ID A0A067KPU3
description Eukaryotic translation initiation factor 3 subunit I OS=Jatropha curcas GN=JCGZ_04844 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit i-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20600: 245061-250322 , PASA_asmbl_20601: 248623-249026
cDNA
(Sanger)
(ID:Location)		 042_C05.ab1: 249739-250311

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_320 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
2 Hb_001473_130 0.0549725236 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
3 Hb_001427_120 0.0725197201 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
4 Hb_000152_140 0.0730854509 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
5 Hb_001718_100 0.0768584278 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
6 Hb_000983_100 0.0780697628 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
7 Hb_000956_010 0.0803654505 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
8 Hb_001366_220 0.0864016824 - - conserved hypothetical protein [Ricinus communis]
9 Hb_071736_020 0.0868356657 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
10 Hb_003086_020 0.0869138699 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
11 Hb_002357_040 0.0874692995 - - latex-abundant protein [Hevea brasiliensis]
12 Hb_004662_030 0.0885449051 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
13 Hb_009026_050 0.0899643425 - - vacuolar ATPase F subunit [Hevea brasiliensis]
14 Hb_001243_050 0.0920216044 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
15 Hb_000086_570 0.0921539134 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
16 Hb_000975_290 0.0927314224 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
17 Hb_000089_130 0.0931812817 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
18 Hb_001369_050 0.0940177501 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
19 Hb_002326_030 0.0941998411 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
20 Hb_001981_090 0.09526566 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]

Gene co-expression network

sample Hb_002025_320 Hb_002025_320 Hb_001473_130 Hb_001473_130 Hb_002025_320--Hb_001473_130 Hb_001427_120 Hb_001427_120 Hb_002025_320--Hb_001427_120 Hb_000152_140 Hb_000152_140 Hb_002025_320--Hb_000152_140 Hb_001718_100 Hb_001718_100 Hb_002025_320--Hb_001718_100 Hb_000983_100 Hb_000983_100 Hb_002025_320--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_002025_320--Hb_000956_010 Hb_001473_130--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_001473_130--Hb_002352_010 Hb_002326_030 Hb_002326_030 Hb_001473_130--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_001473_130--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_001473_130--Hb_000427_110 Hb_001427_120--Hb_000956_010 Hb_001427_120--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_001427_120--Hb_000086_570 Hb_000376_050 Hb_000376_050 Hb_001427_120--Hb_000376_050 Hb_071736_020 Hb_071736_020 Hb_001427_120--Hb_071736_020 Hb_022250_040 Hb_022250_040 Hb_001427_120--Hb_022250_040 Hb_003086_020 Hb_003086_020 Hb_000152_140--Hb_003086_020 Hb_002686_270 Hb_002686_270 Hb_000152_140--Hb_002686_270 Hb_000700_090 Hb_000700_090 Hb_000152_140--Hb_000700_090 Hb_000696_110 Hb_000696_110 Hb_000152_140--Hb_000696_110 Hb_005941_010 Hb_005941_010 Hb_000152_140--Hb_005941_010 Hb_001718_100--Hb_071736_020 Hb_002078_450 Hb_002078_450 Hb_001718_100--Hb_002078_450 Hb_001718_100--Hb_000086_570 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_001718_100--Hb_001691_210 Hb_007229_060 Hb_007229_060 Hb_000983_100--Hb_007229_060 Hb_000091_090 Hb_000091_090 Hb_000983_100--Hb_000091_090 Hb_026988_020 Hb_026988_020 Hb_000983_100--Hb_026988_020 Hb_000983_100--Hb_002527_070 Hb_000956_010--Hb_000376_050 Hb_006693_030 Hb_006693_030 Hb_000956_010--Hb_006693_030 Hb_002603_100 Hb_002603_100 Hb_000956_010--Hb_002603_100 Hb_000956_010--Hb_022250_040 Hb_023386_080 Hb_023386_080 Hb_000956_010--Hb_023386_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
335.645 57.6218 33.6608 63.6199 280.537 490.608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
490.928 415.799 439.358 130.395 31.5495

CAGE analysis