Hb_026988_020

Information

Type -
Description -
Location Contig26988: 7649-10481
Sequence    

Annotation

kegg
ID rcu:RCOM_0522350
description Calcium-activated outward-rectifying potassium channel, putative
nr
ID ACF35048.1
description outward rectifying K+ channel [Hevea brasiliensis]
swissprot
ID Q8LBL1
description Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2
trembl
ID B5A9S7
description Outward rectifying K+ channel OS=Hevea brasiliensis GN=KCO1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description two-pore potassium channel 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28106: 7651-10384 , PASA_asmbl_28107: 9678-10093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026988_020 0.0 - - outward rectifying K+ channel [Hevea brasiliensis]
2 Hb_000983_100 0.0780759657 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
3 Hb_000956_010 0.0791003318 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
4 Hb_001366_230 0.0800043627 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000861_040 0.0813793416 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
6 Hb_004108_050 0.0836591837 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
7 Hb_001677_110 0.0862372813 - - Protein YIPF1, putative [Ricinus communis]
8 Hb_001427_120 0.0881713512 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
9 Hb_001366_220 0.0903176506 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000085_310 0.0923351794 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
11 Hb_002282_020 0.0927606831 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
12 Hb_000173_170 0.0976209231 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
13 Hb_000427_110 0.0980948861 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
14 Hb_002527_070 0.0990048186 - - axonemal dynein light chain, putative [Ricinus communis]
15 Hb_005357_150 0.0990799646 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_002326_030 0.0992289446 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
17 Hb_000086_570 0.0995503347 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
18 Hb_071736_020 0.0995970787 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
19 Hb_000376_050 0.0999153655 - - polyadenylate-binding protein, putative [Ricinus communis]
20 Hb_001981_090 0.0999589207 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]

Gene co-expression network

sample Hb_026988_020 Hb_026988_020 Hb_000983_100 Hb_000983_100 Hb_026988_020--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_026988_020--Hb_000956_010 Hb_001366_230 Hb_001366_230 Hb_026988_020--Hb_001366_230 Hb_000861_040 Hb_000861_040 Hb_026988_020--Hb_000861_040 Hb_004108_050 Hb_004108_050 Hb_026988_020--Hb_004108_050 Hb_001677_110 Hb_001677_110 Hb_026988_020--Hb_001677_110 Hb_007229_060 Hb_007229_060 Hb_000983_100--Hb_007229_060 Hb_001473_130 Hb_001473_130 Hb_000983_100--Hb_001473_130 Hb_000091_090 Hb_000091_090 Hb_000983_100--Hb_000091_090 Hb_002025_320 Hb_002025_320 Hb_000983_100--Hb_002025_320 Hb_002527_070 Hb_002527_070 Hb_000983_100--Hb_002527_070 Hb_001427_120 Hb_001427_120 Hb_000956_010--Hb_001427_120 Hb_000376_050 Hb_000376_050 Hb_000956_010--Hb_000376_050 Hb_006693_030 Hb_006693_030 Hb_000956_010--Hb_006693_030 Hb_002603_100 Hb_002603_100 Hb_000956_010--Hb_002603_100 Hb_022250_040 Hb_022250_040 Hb_000956_010--Hb_022250_040 Hb_023386_080 Hb_023386_080 Hb_000956_010--Hb_023386_080 Hb_001191_100 Hb_001191_100 Hb_001366_230--Hb_001191_100 Hb_025087_010 Hb_025087_010 Hb_001366_230--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_001366_230--Hb_183963_020 Hb_000313_380 Hb_000313_380 Hb_001366_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_003408_030 Hb_003408_030 Hb_000861_040--Hb_003408_030 Hb_002326_030 Hb_002326_030 Hb_000861_040--Hb_002326_030 Hb_000861_040--Hb_002527_070 Hb_000861_040--Hb_007229_060 Hb_000861_040--Hb_000983_100 Hb_005357_150 Hb_005357_150 Hb_004108_050--Hb_005357_150 Hb_000085_310 Hb_000085_310 Hb_004108_050--Hb_000085_310 Hb_027472_180 Hb_027472_180 Hb_004108_050--Hb_027472_180 Hb_004108_050--Hb_023386_080 Hb_003151_050 Hb_003151_050 Hb_004108_050--Hb_003151_050 Hb_002352_010 Hb_002352_010 Hb_001677_110--Hb_002352_010 Hb_001677_110--Hb_001473_130 Hb_000001_050 Hb_000001_050 Hb_001677_110--Hb_000001_050 Hb_008311_010 Hb_008311_010 Hb_001677_110--Hb_008311_010 Hb_002716_070 Hb_002716_070 Hb_001677_110--Hb_002716_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
124.432 16.3869 12.5255 37.7071 136.031 112.61
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
163.223 164.479 201.235 41.2334 10.0423

CAGE analysis