Hb_000861_040

Information

Type -
Description -
Location Contig861: 9648-13159
Sequence    

Annotation

kegg
ID pmum:103330764
description nascent polypeptide-associated complex subunit alpha-like protein 1
nr
ID XP_012068745.1
description PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
swissprot
ID Q9M612
description Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1
trembl
ID A0A067L7V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24589 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60816: 9634-10644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000861_040 0.0 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
2 Hb_003408_030 0.073023148 - - PREDICTED: protein YIF1B [Jatropha curcas]
3 Hb_002326_030 0.0743120268 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
4 Hb_002527_070 0.0774419088 - - axonemal dynein light chain, putative [Ricinus communis]
5 Hb_007229_060 0.0787585319 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
6 Hb_026988_020 0.0813793416 - - outward rectifying K+ channel [Hevea brasiliensis]
7 Hb_000983_100 0.0847963555 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
8 Hb_010589_040 0.0848653789 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002307_090 0.0852731153 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
10 Hb_001981_090 0.0858347179 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
11 Hb_012522_030 0.0874747306 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_002282_020 0.089680752 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
13 Hb_004800_160 0.0909034289 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
14 Hb_005357_150 0.0925767525 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000753_130 0.0938858785 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
16 Hb_000173_170 0.0953686195 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
17 Hb_002291_030 0.0969661238 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
18 Hb_001946_320 0.0970186459 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
19 Hb_001606_070 0.0990291483 - - fimbrin, putative [Ricinus communis]
20 Hb_001473_130 0.1003344422 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]

Gene co-expression network

sample Hb_000861_040 Hb_000861_040 Hb_003408_030 Hb_003408_030 Hb_000861_040--Hb_003408_030 Hb_002326_030 Hb_002326_030 Hb_000861_040--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_000861_040--Hb_002527_070 Hb_007229_060 Hb_007229_060 Hb_000861_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000983_100 Hb_000983_100 Hb_000861_040--Hb_000983_100 Hb_000753_130 Hb_000753_130 Hb_003408_030--Hb_000753_130 Hb_003376_120 Hb_003376_120 Hb_003408_030--Hb_003376_120 Hb_003408_030--Hb_002527_070 Hb_007924_020 Hb_007924_020 Hb_003408_030--Hb_007924_020 Hb_000627_120 Hb_000627_120 Hb_003408_030--Hb_000627_120 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_012522_030 Hb_012522_030 Hb_002326_030--Hb_012522_030 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_001473_130 Hb_001473_130 Hb_002326_030--Hb_001473_130 Hb_002326_030--Hb_007229_060 Hb_001427_120 Hb_001427_120 Hb_002527_070--Hb_001427_120 Hb_001711_030 Hb_001711_030 Hb_002527_070--Hb_001711_030 Hb_002527_070--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_002527_070--Hb_002352_010 Hb_007229_060--Hb_000983_100 Hb_002307_090 Hb_002307_090 Hb_007229_060--Hb_002307_090 Hb_002794_030 Hb_002794_030 Hb_007229_060--Hb_002794_030 Hb_001981_090 Hb_001981_090 Hb_007229_060--Hb_001981_090 Hb_026988_020--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_026988_020--Hb_000956_010 Hb_001366_230 Hb_001366_230 Hb_026988_020--Hb_001366_230 Hb_004108_050 Hb_004108_050 Hb_026988_020--Hb_004108_050 Hb_001677_110 Hb_001677_110 Hb_026988_020--Hb_001677_110 Hb_000983_100--Hb_001473_130 Hb_000091_090 Hb_000091_090 Hb_000983_100--Hb_000091_090 Hb_002025_320 Hb_002025_320 Hb_000983_100--Hb_002025_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
566.669 59.5384 82.3341 77.1221 427.96 433.57
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
683.499 676.146 1020.02 171.668 55.6809

CAGE analysis