Hb_003376_120

Information

Type -
Description -
Location Contig3376: 92821-95488
Sequence    

Annotation

kegg
ID rcu:RCOM_0819280
description hypothetical protein
nr
ID XP_012082316.1
description PREDICTED: cell number regulator 8 [Jatropha curcas]
swissprot
ID B4FUS3
description Cell number regulator 8 OS=Zea mays GN=CNR8 PE=2 SV=1
trembl
ID A0A067K1Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16482 PE=4 SV=1
Gene Ontology
ID GO:0006499
description cell number regulator 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35329: 92685-95655
cDNA
(Sanger)
(ID:Location)		 021_L12.ab1: 92750-95402 , 027_K23.ab1: 92750-95431 , 028_F19.ab1: 92750-95388 , 035_F18.ab1: 92685-95383 , 035_H04.ab1: 92685-95422 , 051_H18.ab1: 92685-95353 , 051_K16.ab1: 92685-94245

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_120 0.0 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
2 Hb_000634_100 0.0624351985 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
3 Hb_003408_030 0.0701321948 - - PREDICTED: protein YIF1B [Jatropha curcas]
4 Hb_023386_080 0.0788898254 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
5 Hb_044662_070 0.0859891739 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
6 Hb_007924_020 0.0875511517 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_000627_120 0.0885563788 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
8 Hb_000329_040 0.0894301514 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
9 Hb_000753_130 0.0924297527 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
10 Hb_000510_140 0.0931330488 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
11 Hb_000270_270 0.0990558418 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
12 Hb_000431_010 0.100406732 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
13 Hb_065500_050 0.1006205437 - - lipoate-protein ligase B, putative [Ricinus communis]
14 Hb_001396_180 0.1021286117 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
15 Hb_011794_070 0.1029584049 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
16 Hb_178968_110 0.1031871415 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
17 Hb_002527_070 0.1033036843 - - axonemal dynein light chain, putative [Ricinus communis]
18 Hb_005357_150 0.1047724307 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000173_170 0.105250536 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
20 Hb_011224_110 0.1053830201 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]

Gene co-expression network

sample Hb_003376_120 Hb_003376_120 Hb_000634_100 Hb_000634_100 Hb_003376_120--Hb_000634_100 Hb_003408_030 Hb_003408_030 Hb_003376_120--Hb_003408_030 Hb_023386_080 Hb_023386_080 Hb_003376_120--Hb_023386_080 Hb_044662_070 Hb_044662_070 Hb_003376_120--Hb_044662_070 Hb_007924_020 Hb_007924_020 Hb_003376_120--Hb_007924_020 Hb_000627_120 Hb_000627_120 Hb_003376_120--Hb_000627_120 Hb_000634_100--Hb_023386_080 Hb_000329_040 Hb_000329_040 Hb_000634_100--Hb_000329_040 Hb_005333_130 Hb_005333_130 Hb_000634_100--Hb_005333_130 Hb_000634_100--Hb_003408_030 Hb_000634_100--Hb_044662_070 Hb_000753_130 Hb_000753_130 Hb_003408_030--Hb_000753_130 Hb_000861_040 Hb_000861_040 Hb_003408_030--Hb_000861_040 Hb_002527_070 Hb_002527_070 Hb_003408_030--Hb_002527_070 Hb_003408_030--Hb_007924_020 Hb_003408_030--Hb_000627_120 Hb_002603_100 Hb_002603_100 Hb_023386_080--Hb_002603_100 Hb_023386_080--Hb_000329_040 Hb_023386_080--Hb_044662_070 Hb_000956_010 Hb_000956_010 Hb_023386_080--Hb_000956_010 Hb_000376_050 Hb_000376_050 Hb_023386_080--Hb_000376_050 Hb_004108_230 Hb_004108_230 Hb_044662_070--Hb_004108_230 Hb_044662_070--Hb_007924_020 Hb_003175_040 Hb_003175_040 Hb_044662_070--Hb_003175_040 Hb_003408_020 Hb_003408_020 Hb_044662_070--Hb_003408_020 Hb_000622_040 Hb_000622_040 Hb_007924_020--Hb_000622_040 Hb_008289_060 Hb_008289_060 Hb_007924_020--Hb_008289_060 Hb_000429_170 Hb_000429_170 Hb_007924_020--Hb_000429_170 Hb_002716_070 Hb_002716_070 Hb_000627_120--Hb_002716_070 Hb_000205_270 Hb_000205_270 Hb_000627_120--Hb_000205_270 Hb_000627_120--Hb_044662_070 Hb_009486_130 Hb_009486_130 Hb_000627_120--Hb_009486_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
306.195 54.7971 116.15 77.3192 235.572 210.695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
320.443 352.861 496.253 72.7434 64.4697

CAGE analysis