Hb_000753_130

Information

Type -
Description -
Location Contig753: 130672-136535
Sequence    

Annotation

kegg
ID rcu:RCOM_1467330
description hypothetical protein
nr
ID XP_012080438.1
description PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11768 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56911: 135424-136514
cDNA
(Sanger)
(ID:Location)		 031_E21.ab1: 135424-136511

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000753_130 0.0 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
2 Hb_003408_030 0.0630084975 - - PREDICTED: protein YIF1B [Jatropha curcas]
3 Hb_027402_070 0.0744066956 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
4 Hb_002527_070 0.0857275721 - - axonemal dynein light chain, putative [Ricinus communis]
5 Hb_008289_060 0.0885196412 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
6 Hb_000431_010 0.0886236775 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
7 Hb_001141_280 0.090490262 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
8 Hb_001691_210 0.0912202625 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
9 Hb_000089_160 0.0915045616 - - 60S ribosomal protein L5B [Hevea brasiliensis]
10 Hb_003376_120 0.0924297527 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
11 Hb_000861_040 0.0938858785 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
12 Hb_005694_080 0.0941678692 - - DNA-directed RNA polymerase III, putative [Ricinus communis]
13 Hb_000377_060 0.0950548524 - - ARF GTPase activator, putative [Ricinus communis]
14 Hb_007924_020 0.0956900301 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_000239_010 0.0959365968 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_000205_270 0.0960505515 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
17 Hb_000671_150 0.097790975 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
18 Hb_001109_020 0.0986557178 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007943_090 0.0986993908 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
20 Hb_000979_230 0.0994496191 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000753_130 Hb_000753_130 Hb_003408_030 Hb_003408_030 Hb_000753_130--Hb_003408_030 Hb_027402_070 Hb_027402_070 Hb_000753_130--Hb_027402_070 Hb_002527_070 Hb_002527_070 Hb_000753_130--Hb_002527_070 Hb_008289_060 Hb_008289_060 Hb_000753_130--Hb_008289_060 Hb_000431_010 Hb_000431_010 Hb_000753_130--Hb_000431_010 Hb_001141_280 Hb_001141_280 Hb_000753_130--Hb_001141_280 Hb_003376_120 Hb_003376_120 Hb_003408_030--Hb_003376_120 Hb_000861_040 Hb_000861_040 Hb_003408_030--Hb_000861_040 Hb_003408_030--Hb_002527_070 Hb_007924_020 Hb_007924_020 Hb_003408_030--Hb_007924_020 Hb_000627_120 Hb_000627_120 Hb_003408_030--Hb_000627_120 Hb_000377_060 Hb_000377_060 Hb_027402_070--Hb_000377_060 Hb_027402_070--Hb_001141_280 Hb_000976_360 Hb_000976_360 Hb_027402_070--Hb_000976_360 Hb_029866_040 Hb_029866_040 Hb_027402_070--Hb_029866_040 Hb_000975_300 Hb_000975_300 Hb_027402_070--Hb_000975_300 Hb_001427_120 Hb_001427_120 Hb_002527_070--Hb_001427_120 Hb_002527_070--Hb_000861_040 Hb_001711_030 Hb_001711_030 Hb_002527_070--Hb_001711_030 Hb_000983_100 Hb_000983_100 Hb_002527_070--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_002527_070--Hb_002352_010 Hb_000030_100 Hb_000030_100 Hb_008289_060--Hb_000030_100 Hb_004951_040 Hb_004951_040 Hb_008289_060--Hb_004951_040 Hb_055062_030 Hb_055062_030 Hb_008289_060--Hb_055062_030 Hb_007943_090 Hb_007943_090 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_002918_200 Hb_002918_200 Hb_008289_060--Hb_002918_200 Hb_002687_110 Hb_002687_110 Hb_000431_010--Hb_002687_110 Hb_031862_110 Hb_031862_110 Hb_000431_010--Hb_031862_110 Hb_009486_130 Hb_009486_130 Hb_000431_010--Hb_009486_130 Hb_008300_010 Hb_008300_010 Hb_000431_010--Hb_008300_010 Hb_001277_330 Hb_001277_330 Hb_000431_010--Hb_001277_330 Hb_001140_060 Hb_001140_060 Hb_000431_010--Hb_001140_060 Hb_009666_040 Hb_009666_040 Hb_001141_280--Hb_009666_040 Hb_001829_060 Hb_001829_060 Hb_001141_280--Hb_001829_060 Hb_003018_190 Hb_003018_190 Hb_001141_280--Hb_003018_190 Hb_001862_100 Hb_001862_100 Hb_001141_280--Hb_001862_100 Hb_000239_010 Hb_000239_010 Hb_001141_280--Hb_000239_010 Hb_001109_020 Hb_001109_020 Hb_001141_280--Hb_001109_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.6757 1.2041 1.88191 2.53821 5.62118 6.52411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.06685 10.7148 15 4.39265 1.61903

CAGE analysis