Hb_027402_070

Information

Type transcription factor
Description TF Family: M-type
Location Contig27402: 41811-46532
Sequence    

Annotation

kegg
ID rcu:RCOM_1471600
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_002514742.1
description mads box protein, putative [Ricinus communis]
swissprot
ID Q03488
description Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1
trembl
ID B9RLX3
description Mads box protein, putative OS=Ricinus communis GN=RCOM_1471600 PE=4 SV=1
Gene Ontology
ID GO:0005488
description mads-box protein defh21-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28692: 43785-43920 , PASA_asmbl_28693: 44368-45640
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027402_070 0.0 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
2 Hb_000753_130 0.0744066956 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
3 Hb_000377_060 0.0940438965 - - ARF GTPase activator, putative [Ricinus communis]
4 Hb_001141_280 0.0968010056 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
5 Hb_000976_360 0.0984516619 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
6 Hb_029866_040 0.1073954019 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
7 Hb_000975_300 0.1074176534 - - Rab2 [Hevea brasiliensis]
8 Hb_000979_230 0.1089693865 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
9 Hb_000963_180 0.1096867215 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
10 Hb_031862_110 0.1100700461 - - calcium-dependent protein kinase [Hevea brasiliensis]
11 Hb_012779_100 0.1112876567 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002769_050 0.1116407795 - - PREDICTED: endophilin-A1 [Jatropha curcas]
13 Hb_000023_340 0.1126120927 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
14 Hb_000431_010 0.1127127331 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
15 Hb_009666_040 0.1131413573 - - glutathione transferase, putative [Ricinus communis]
16 Hb_003551_050 0.1151735861 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
17 Hb_001109_020 0.1165691115 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003408_030 0.1165896346 - - PREDICTED: protein YIF1B [Jatropha curcas]
19 Hb_003018_190 0.1169039127 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
20 Hb_000239_010 0.1187552435 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_027402_070 Hb_027402_070 Hb_000753_130 Hb_000753_130 Hb_027402_070--Hb_000753_130 Hb_000377_060 Hb_000377_060 Hb_027402_070--Hb_000377_060 Hb_001141_280 Hb_001141_280 Hb_027402_070--Hb_001141_280 Hb_000976_360 Hb_000976_360 Hb_027402_070--Hb_000976_360 Hb_029866_040 Hb_029866_040 Hb_027402_070--Hb_029866_040 Hb_000975_300 Hb_000975_300 Hb_027402_070--Hb_000975_300 Hb_003408_030 Hb_003408_030 Hb_000753_130--Hb_003408_030 Hb_002527_070 Hb_002527_070 Hb_000753_130--Hb_002527_070 Hb_008289_060 Hb_008289_060 Hb_000753_130--Hb_008289_060 Hb_000431_010 Hb_000431_010 Hb_000753_130--Hb_000431_010 Hb_000753_130--Hb_001141_280 Hb_001109_020 Hb_001109_020 Hb_000377_060--Hb_001109_020 Hb_000377_060--Hb_029866_040 Hb_011381_100 Hb_011381_100 Hb_000377_060--Hb_011381_100 Hb_003018_190 Hb_003018_190 Hb_000377_060--Hb_003018_190 Hb_003632_010 Hb_003632_010 Hb_000377_060--Hb_003632_010 Hb_008311_010 Hb_008311_010 Hb_000377_060--Hb_008311_010 Hb_009666_040 Hb_009666_040 Hb_001141_280--Hb_009666_040 Hb_001829_060 Hb_001829_060 Hb_001141_280--Hb_001829_060 Hb_001141_280--Hb_003018_190 Hb_001862_100 Hb_001862_100 Hb_001141_280--Hb_001862_100 Hb_000239_010 Hb_000239_010 Hb_001141_280--Hb_000239_010 Hb_001141_280--Hb_001109_020 Hb_000976_360--Hb_001141_280 Hb_000046_290 Hb_000046_290 Hb_000976_360--Hb_000046_290 Hb_000963_180 Hb_000963_180 Hb_000976_360--Hb_000963_180 Hb_000224_120 Hb_000224_120 Hb_000976_360--Hb_000224_120 Hb_003551_050 Hb_003551_050 Hb_000976_360--Hb_003551_050 Hb_005431_010 Hb_005431_010 Hb_029866_040--Hb_005431_010 Hb_000001_050 Hb_000001_050 Hb_029866_040--Hb_000001_050 Hb_029866_040--Hb_011381_100 Hb_029866_040--Hb_001109_020 Hb_000009_160 Hb_000009_160 Hb_029866_040--Hb_000009_160 Hb_000062_340 Hb_000062_340 Hb_000975_300--Hb_000062_340 Hb_007594_120 Hb_007594_120 Hb_000975_300--Hb_007594_120 Hb_020301_040 Hb_020301_040 Hb_000975_300--Hb_020301_040 Hb_000975_300--Hb_000963_180 Hb_002182_030 Hb_002182_030 Hb_000975_300--Hb_002182_030 Hb_002876_120 Hb_002876_120 Hb_000975_300--Hb_002876_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.44275 0.574219 1.2804 1.97586 2.06556 3.84247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.75266 6.16932 8.68164 2.3629 0.740296

CAGE analysis