Hb_000224_120

Information

Type -
Description -
Location Contig224: 68320-68757
Sequence    

Annotation

kegg
ID rcu:RCOM_0510890
description eif-1a, putative
nr
ID ADV04051.1
description eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
swissprot
ID P56331
description Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2
trembl
ID F8RW94
description Eukaryotic translation initiation factor 1Aa OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23293: 68117-69442 , PASA_asmbl_23294: 68845-69103
cDNA
(Sanger)
(ID:Location)		 014_G06.ab1: 68156-69442 , 040_O05.ab1: 68118-69353

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_120 0.0 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
2 Hb_011457_090 0.0852365743 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
3 Hb_004336_050 0.0914183517 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
4 Hb_000975_110 0.0915440256 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
5 Hb_004374_140 0.0931756403 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
6 Hb_001307_090 0.0947946776 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
7 Hb_000963_180 0.0968266297 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
8 Hb_000856_260 0.0968419759 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
9 Hb_124755_010 0.0971877233 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
10 Hb_000976_360 0.0994775967 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
11 Hb_007594_090 0.0996187959 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
12 Hb_180301_010 0.1009336798 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
13 Hb_006472_050 0.1018801931 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
14 Hb_000672_120 0.1022359225 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
15 Hb_004659_060 0.1027520776 - - RAS-related GTP-binding family protein [Populus trichocarpa]
16 Hb_003561_030 0.1028283375 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
17 Hb_001427_230 0.1030343925 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011537_110 0.1033613021 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
19 Hb_001357_080 0.1039626603 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
20 Hb_000046_110 0.1072796734 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000224_120 Hb_000224_120 Hb_011457_090 Hb_011457_090 Hb_000224_120--Hb_011457_090 Hb_004336_050 Hb_004336_050 Hb_000224_120--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_000224_120--Hb_000975_110 Hb_004374_140 Hb_004374_140 Hb_000224_120--Hb_004374_140 Hb_001307_090 Hb_001307_090 Hb_000224_120--Hb_001307_090 Hb_000963_180 Hb_000963_180 Hb_000224_120--Hb_000963_180 Hb_011537_110 Hb_011537_110 Hb_011457_090--Hb_011537_110 Hb_001153_060 Hb_001153_060 Hb_011457_090--Hb_001153_060 Hb_000300_220 Hb_000300_220 Hb_011457_090--Hb_000300_220 Hb_000635_150 Hb_000635_150 Hb_011457_090--Hb_000635_150 Hb_011457_090--Hb_004336_050 Hb_000672_120 Hb_000672_120 Hb_004336_050--Hb_000672_120 Hb_004336_050--Hb_004374_140 Hb_180301_010 Hb_180301_010 Hb_004336_050--Hb_180301_010 Hb_172706_030 Hb_172706_030 Hb_004336_050--Hb_172706_030 Hb_008544_010 Hb_008544_010 Hb_004336_050--Hb_008544_010 Hb_004336_050--Hb_001307_090 Hb_000024_030 Hb_000024_030 Hb_000975_110--Hb_000024_030 Hb_011161_050 Hb_011161_050 Hb_000975_110--Hb_011161_050 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_003561_030 Hb_003561_030 Hb_000975_110--Hb_003561_030 Hb_000975_110--Hb_001307_090 Hb_001433_050 Hb_001433_050 Hb_000975_110--Hb_001433_050 Hb_004374_140--Hb_008544_010 Hb_001461_010 Hb_001461_010 Hb_004374_140--Hb_001461_010 Hb_004374_140--Hb_180301_010 Hb_002631_020 Hb_002631_020 Hb_004374_140--Hb_002631_020 Hb_124755_010 Hb_124755_010 Hb_004374_140--Hb_124755_010 Hb_000122_020 Hb_000122_020 Hb_001307_090--Hb_000122_020 Hb_001307_090--Hb_124755_010 Hb_001307_090--Hb_000024_030 Hb_004449_200 Hb_004449_200 Hb_001307_090--Hb_004449_200 Hb_000023_340 Hb_000023_340 Hb_000963_180--Hb_000023_340 Hb_029866_070 Hb_029866_070 Hb_000963_180--Hb_029866_070 Hb_000046_110 Hb_000046_110 Hb_000963_180--Hb_000046_110 Hb_000963_180--Hb_001461_010 Hb_001829_060 Hb_001829_060 Hb_000963_180--Hb_001829_060 Hb_029866_040 Hb_029866_040 Hb_000963_180--Hb_029866_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
450.833 129.904 109.579 746.86 304.541 1073.82
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1273.83 1664.71 1715.04 526.105 281.481

CAGE analysis