Hb_011457_090

Information

Type -
Description -
Location Contig11457: 47591-55861
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23500g
description POPTRDRAFT_559591; hypothetical protein
nr
ID XP_012092191.1
description PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
swissprot
ID Q42777
description Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2
trembl
ID A0A067JC78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21888 PE=4 SV=1
Gene Ontology
ID GO:0016874
description methylcrotonoyl- carboxylase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04402: 50736-55897
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011457_090 0.0 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
2 Hb_011537_110 0.0819241268 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
3 Hb_000224_120 0.0852365743 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
4 Hb_001153_060 0.0925482278 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000300_220 0.0932976452 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
6 Hb_000635_150 0.0975948073 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
7 Hb_004336_050 0.0985642707 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
8 Hb_000898_050 0.1004990149 - - -
9 Hb_001307_090 0.1030055078 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
10 Hb_004374_140 0.104826624 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
11 Hb_008544_010 0.1074687524 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
12 Hb_004659_060 0.1078212319 - - RAS-related GTP-binding family protein [Populus trichocarpa]
13 Hb_006472_050 0.1096799353 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
14 Hb_000322_140 0.1103853743 - - hypothetical protein RCOM_1047200 [Ricinus communis]
15 Hb_027625_010 0.111453626 - - PREDICTED: protein sym-1-like [Jatropha curcas]
16 Hb_001461_010 0.1115686721 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
17 Hb_007926_060 0.1139886162 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
18 Hb_001504_080 0.1152077983 - - golgi snare 11 protein, putative [Ricinus communis]
19 Hb_000672_120 0.1172391752 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
20 Hb_005588_070 0.1179244403 - - hypothetical protein JCGZ_04298 [Jatropha curcas]

Gene co-expression network

sample Hb_011457_090 Hb_011457_090 Hb_011537_110 Hb_011537_110 Hb_011457_090--Hb_011537_110 Hb_000224_120 Hb_000224_120 Hb_011457_090--Hb_000224_120 Hb_001153_060 Hb_001153_060 Hb_011457_090--Hb_001153_060 Hb_000300_220 Hb_000300_220 Hb_011457_090--Hb_000300_220 Hb_000635_150 Hb_000635_150 Hb_011457_090--Hb_000635_150 Hb_004336_050 Hb_004336_050 Hb_011457_090--Hb_004336_050 Hb_027625_010 Hb_027625_010 Hb_011537_110--Hb_027625_010 Hb_011537_110--Hb_000300_220 Hb_001235_030 Hb_001235_030 Hb_011537_110--Hb_001235_030 Hb_011537_110--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_011537_110--Hb_000046_290 Hb_000224_120--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_000224_120--Hb_000975_110 Hb_004374_140 Hb_004374_140 Hb_000224_120--Hb_004374_140 Hb_001307_090 Hb_001307_090 Hb_000224_120--Hb_001307_090 Hb_000963_180 Hb_000963_180 Hb_000224_120--Hb_000963_180 Hb_003207_170 Hb_003207_170 Hb_001153_060--Hb_003207_170 Hb_007926_060 Hb_007926_060 Hb_001153_060--Hb_007926_060 Hb_006472_050 Hb_006472_050 Hb_001153_060--Hb_006472_050 Hb_180301_010 Hb_180301_010 Hb_001153_060--Hb_180301_010 Hb_000898_050 Hb_000898_050 Hb_001153_060--Hb_000898_050 Hb_001008_090 Hb_001008_090 Hb_000300_220--Hb_001008_090 Hb_000322_140 Hb_000322_140 Hb_000300_220--Hb_000322_140 Hb_068056_030 Hb_068056_030 Hb_000300_220--Hb_068056_030 Hb_183961_010 Hb_183961_010 Hb_000300_220--Hb_183961_010 Hb_000985_060 Hb_000985_060 Hb_000635_150--Hb_000985_060 Hb_001519_050 Hb_001519_050 Hb_000635_150--Hb_001519_050 Hb_005092_060 Hb_005092_060 Hb_000635_150--Hb_005092_060 Hb_000125_190 Hb_000125_190 Hb_000635_150--Hb_000125_190 Hb_002759_060 Hb_002759_060 Hb_000635_150--Hb_002759_060 Hb_002005_020 Hb_002005_020 Hb_000635_150--Hb_002005_020 Hb_000672_120 Hb_000672_120 Hb_004336_050--Hb_000672_120 Hb_004336_050--Hb_004374_140 Hb_004336_050--Hb_180301_010 Hb_172706_030 Hb_172706_030 Hb_004336_050--Hb_172706_030 Hb_008544_010 Hb_008544_010 Hb_004336_050--Hb_008544_010 Hb_004336_050--Hb_001307_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.435942 0.128771 0.135083 0.825134 0.193464 0.876492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31431 1.11321 1.46378 0.431665 0.406731

CAGE analysis