Hb_003207_170

Information

Type -
Description -
Location Contig3207: 207176-210633
Sequence    

Annotation

kegg
ID pmum:103337414
description calcium-dependent protein kinase 26-like
nr
ID XP_012087013.1
description PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
swissprot
ID Q06850
description Calcium-dependent protein kinase 1 OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1
trembl
ID A0A067JZT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20676 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 26

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33912: 207361-207659 , PASA_asmbl_33913: 207787-210802 , PASA_asmbl_33915: 209243-209438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003207_170 0.0 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
2 Hb_001153_060 0.0860156113 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000019_070 0.0896184262 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
4 Hb_000373_130 0.1026172191 - - PREDICTED: protein FAM188A [Jatropha curcas]
5 Hb_000567_120 0.1087867146 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
6 Hb_000985_060 0.1092233497 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
7 Hb_027625_010 0.109315117 - - PREDICTED: protein sym-1-like [Jatropha curcas]
8 Hb_114310_080 0.1098830875 - - conserved hypothetical protein [Ricinus communis]
9 Hb_178968_130 0.1107064236 - - unknown [Populus trichocarpa x Populus deltoides]
10 Hb_028515_010 0.1111292711 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
11 Hb_000483_390 0.1118295406 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
12 Hb_003414_050 0.1118964819 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
13 Hb_000635_150 0.1132781375 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
14 Hb_006472_050 0.1133855909 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
15 Hb_001519_050 0.1145875248 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
16 Hb_007926_060 0.1153223705 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
17 Hb_001461_010 0.1175890149 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
18 Hb_003671_020 0.1193420942 - - calcineurin B, putative [Ricinus communis]
19 Hb_005568_120 0.11951636 - - Prephenate dehydratase [Hevea brasiliensis]
20 Hb_004374_140 0.1204887836 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]

Gene co-expression network

sample Hb_003207_170 Hb_003207_170 Hb_001153_060 Hb_001153_060 Hb_003207_170--Hb_001153_060 Hb_000019_070 Hb_000019_070 Hb_003207_170--Hb_000019_070 Hb_000373_130 Hb_000373_130 Hb_003207_170--Hb_000373_130 Hb_000567_120 Hb_000567_120 Hb_003207_170--Hb_000567_120 Hb_000985_060 Hb_000985_060 Hb_003207_170--Hb_000985_060 Hb_027625_010 Hb_027625_010 Hb_003207_170--Hb_027625_010 Hb_011457_090 Hb_011457_090 Hb_001153_060--Hb_011457_090 Hb_007926_060 Hb_007926_060 Hb_001153_060--Hb_007926_060 Hb_006472_050 Hb_006472_050 Hb_001153_060--Hb_006472_050 Hb_180301_010 Hb_180301_010 Hb_001153_060--Hb_180301_010 Hb_000898_050 Hb_000898_050 Hb_001153_060--Hb_000898_050 Hb_114310_080 Hb_114310_080 Hb_000019_070--Hb_114310_080 Hb_000483_390 Hb_000483_390 Hb_000019_070--Hb_000483_390 Hb_011377_050 Hb_011377_050 Hb_000019_070--Hb_011377_050 Hb_000392_380 Hb_000392_380 Hb_000019_070--Hb_000392_380 Hb_003671_020 Hb_003671_020 Hb_000019_070--Hb_003671_020 Hb_004837_160 Hb_004837_160 Hb_000373_130--Hb_004837_160 Hb_028515_010 Hb_028515_010 Hb_000373_130--Hb_028515_010 Hb_003349_090 Hb_003349_090 Hb_000373_130--Hb_003349_090 Hb_001519_050 Hb_001519_050 Hb_000373_130--Hb_001519_050 Hb_005568_120 Hb_005568_120 Hb_000373_130--Hb_005568_120 Hb_000373_130--Hb_000567_120 Hb_008695_100 Hb_008695_100 Hb_000567_120--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_000567_120--Hb_001140_220 Hb_000723_080 Hb_000723_080 Hb_000567_120--Hb_000723_080 Hb_000258_270 Hb_000258_270 Hb_000567_120--Hb_000258_270 Hb_004607_030 Hb_004607_030 Hb_000567_120--Hb_004607_030 Hb_002005_020 Hb_002005_020 Hb_000567_120--Hb_002005_020 Hb_000635_150 Hb_000635_150 Hb_000985_060--Hb_000635_150 Hb_000479_190 Hb_000479_190 Hb_000985_060--Hb_000479_190 Hb_000985_060--Hb_114310_080 Hb_000363_360 Hb_000363_360 Hb_000985_060--Hb_000363_360 Hb_000985_060--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_000985_060--Hb_029388_030 Hb_000817_030 Hb_000817_030 Hb_027625_010--Hb_000817_030 Hb_000046_290 Hb_000046_290 Hb_027625_010--Hb_000046_290 Hb_011644_030 Hb_011644_030 Hb_027625_010--Hb_011644_030 Hb_000230_510 Hb_000230_510 Hb_027625_010--Hb_000230_510 Hb_011537_110 Hb_011537_110 Hb_027625_010--Hb_011537_110 Hb_000072_180 Hb_000072_180 Hb_027625_010--Hb_000072_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9854 16.12 6.09883 29.349 8.91172 24.676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.828 55.8681 57.9177 11.551 14.4115

CAGE analysis