Hb_000072_180

Information

Type -
Description -
Location Contig72: 323331-329590
Sequence    

Annotation

kegg
ID rcu:RCOM_0596820
description ecotropic viral integration site, putative
nr
ID XP_012088126.1
description PREDICTED: EVI5-like protein [Jatropha curcas]
swissprot
ID Q9VYY9
description Ecotropic viral integration site 5 ortholog OS=Drosophila melanogaster GN=Evi5 PE=1 SV=3
trembl
ID A0A067JWG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25641 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55589: 323485-329560 , PASA_asmbl_55590: 323485-329560 , PASA_asmbl_55591: 323485-328196
cDNA
(Sanger)
(ID:Location)		 032_N04.ab1: 323485-324589

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_180 0.0 - - PREDICTED: EVI5-like protein [Jatropha curcas]
2 Hb_006420_100 0.0579024876 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
3 Hb_000046_350 0.0581132935 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004672_010 0.0765331369 - - ecotropic viral integration site, putative [Ricinus communis]
5 Hb_028515_010 0.0796634928 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
6 Hb_027625_010 0.0802593679 - - PREDICTED: protein sym-1-like [Jatropha curcas]
7 Hb_148113_010 0.0830629738 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
8 Hb_001235_030 0.0840967173 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
9 Hb_004837_160 0.0855237316 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
10 Hb_000635_150 0.0896240837 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
11 Hb_005568_120 0.0899909381 - - Prephenate dehydratase [Hevea brasiliensis]
12 Hb_001222_080 0.0921087781 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
13 Hb_005092_060 0.093470052 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
14 Hb_000985_060 0.0937786184 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
15 Hb_003697_040 0.093787387 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
16 Hb_000817_030 0.0951087367 - - mak, putative [Ricinus communis]
17 Hb_005488_200 0.0965671537 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
18 Hb_011534_030 0.0974589702 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
19 Hb_001481_140 0.0975139193 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
20 Hb_001484_010 0.098203299 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]

Gene co-expression network

sample Hb_000072_180 Hb_000072_180 Hb_006420_100 Hb_006420_100 Hb_000072_180--Hb_006420_100 Hb_000046_350 Hb_000046_350 Hb_000072_180--Hb_000046_350 Hb_004672_010 Hb_004672_010 Hb_000072_180--Hb_004672_010 Hb_028515_010 Hb_028515_010 Hb_000072_180--Hb_028515_010 Hb_027625_010 Hb_027625_010 Hb_000072_180--Hb_027625_010 Hb_148113_010 Hb_148113_010 Hb_000072_180--Hb_148113_010 Hb_002111_040 Hb_002111_040 Hb_006420_100--Hb_002111_040 Hb_006420_100--Hb_000046_350 Hb_002183_060 Hb_002183_060 Hb_006420_100--Hb_002183_060 Hb_001545_170 Hb_001545_170 Hb_006420_100--Hb_001545_170 Hb_000023_090 Hb_000023_090 Hb_006420_100--Hb_000023_090 Hb_000046_350--Hb_004672_010 Hb_001222_080 Hb_001222_080 Hb_000046_350--Hb_001222_080 Hb_001284_030 Hb_001284_030 Hb_000046_350--Hb_001284_030 Hb_000046_350--Hb_148113_010 Hb_005137_060 Hb_005137_060 Hb_004672_010--Hb_005137_060 Hb_000417_260 Hb_000417_260 Hb_004672_010--Hb_000417_260 Hb_008232_010 Hb_008232_010 Hb_004672_010--Hb_008232_010 Hb_027654_050 Hb_027654_050 Hb_004672_010--Hb_027654_050 Hb_005568_120 Hb_005568_120 Hb_028515_010--Hb_005568_120 Hb_004837_160 Hb_004837_160 Hb_028515_010--Hb_004837_160 Hb_000373_130 Hb_000373_130 Hb_028515_010--Hb_000373_130 Hb_003349_090 Hb_003349_090 Hb_028515_010--Hb_003349_090 Hb_114310_080 Hb_114310_080 Hb_028515_010--Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_028515_010--Hb_000985_060 Hb_000817_030 Hb_000817_030 Hb_027625_010--Hb_000817_030 Hb_000046_290 Hb_000046_290 Hb_027625_010--Hb_000046_290 Hb_011644_030 Hb_011644_030 Hb_027625_010--Hb_011644_030 Hb_000230_510 Hb_000230_510 Hb_027625_010--Hb_000230_510 Hb_011537_110 Hb_011537_110 Hb_027625_010--Hb_011537_110 Hb_005488_200 Hb_005488_200 Hb_148113_010--Hb_005488_200 Hb_148113_010--Hb_000023_090 Hb_148113_010--Hb_028515_010 Hb_000120_020 Hb_000120_020 Hb_148113_010--Hb_000120_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.99265 4.60348 4.38063 12.9989 5.25497 12.7617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0157 25.2848 23.521 14.0714 12.0032

CAGE analysis