Hb_011537_110

Information

Type -
Description -
Location Contig11537: 129444-129857
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa013160mg
description hypothetical protein
nr
ID XP_007206129.1
description hypothetical protein PRUPE_ppa013160mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5WDG9
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013160mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04661: 127815-130216 , PASA_asmbl_04662: 128704-128965
cDNA
(Sanger)
(ID:Location)		 007_I09.ab1: 127871-129905 , 018_G13.ab1: 127815-129737 , 023_H12.ab1: 127869-129546 , 045_E05.ab1: 127825-129852

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011537_110 0.0 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
2 Hb_027625_010 0.0794296635 - - PREDICTED: protein sym-1-like [Jatropha curcas]
3 Hb_011457_090 0.0819241268 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
4 Hb_000300_220 0.0883148258 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
5 Hb_001235_030 0.1024681837 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
6 Hb_000224_120 0.1033613021 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
7 Hb_000046_290 0.1044286801 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
8 Hb_029866_070 0.1045642117 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
9 Hb_000072_180 0.1064460599 - - PREDICTED: EVI5-like protein [Jatropha curcas]
10 Hb_005092_060 0.107120352 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
11 Hb_001014_230 0.1095746325 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
12 Hb_001008_090 0.1105469411 - - cytochrome C oxidase, putative [Ricinus communis]
13 Hb_001461_010 0.1123023583 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
14 Hb_000635_150 0.113045426 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
15 Hb_114336_020 0.1136219513 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
16 Hb_004659_060 0.1155298888 - - RAS-related GTP-binding family protein [Populus trichocarpa]
17 Hb_012794_010 0.1161803742 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
18 Hb_006429_010 0.116333656 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
19 Hb_064441_010 0.1164432229 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
20 Hb_000976_360 0.1175418191 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]

Gene co-expression network

sample Hb_011537_110 Hb_011537_110 Hb_027625_010 Hb_027625_010 Hb_011537_110--Hb_027625_010 Hb_011457_090 Hb_011457_090 Hb_011537_110--Hb_011457_090 Hb_000300_220 Hb_000300_220 Hb_011537_110--Hb_000300_220 Hb_001235_030 Hb_001235_030 Hb_011537_110--Hb_001235_030 Hb_000224_120 Hb_000224_120 Hb_011537_110--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_011537_110--Hb_000046_290 Hb_000817_030 Hb_000817_030 Hb_027625_010--Hb_000817_030 Hb_027625_010--Hb_000046_290 Hb_011644_030 Hb_011644_030 Hb_027625_010--Hb_011644_030 Hb_000230_510 Hb_000230_510 Hb_027625_010--Hb_000230_510 Hb_000072_180 Hb_000072_180 Hb_027625_010--Hb_000072_180 Hb_011457_090--Hb_000224_120 Hb_001153_060 Hb_001153_060 Hb_011457_090--Hb_001153_060 Hb_011457_090--Hb_000300_220 Hb_000635_150 Hb_000635_150 Hb_011457_090--Hb_000635_150 Hb_004336_050 Hb_004336_050 Hb_011457_090--Hb_004336_050 Hb_001008_090 Hb_001008_090 Hb_000300_220--Hb_001008_090 Hb_000322_140 Hb_000322_140 Hb_000300_220--Hb_000322_140 Hb_068056_030 Hb_068056_030 Hb_000300_220--Hb_068056_030 Hb_183961_010 Hb_183961_010 Hb_000300_220--Hb_183961_010 Hb_005092_060 Hb_005092_060 Hb_001235_030--Hb_005092_060 Hb_001014_230 Hb_001014_230 Hb_001235_030--Hb_001014_230 Hb_114336_020 Hb_114336_020 Hb_001235_030--Hb_114336_020 Hb_008554_070 Hb_008554_070 Hb_001235_030--Hb_008554_070 Hb_011534_030 Hb_011534_030 Hb_001235_030--Hb_011534_030 Hb_002016_120 Hb_002016_120 Hb_001235_030--Hb_002016_120 Hb_000224_120--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_000224_120--Hb_000975_110 Hb_004374_140 Hb_004374_140 Hb_000224_120--Hb_004374_140 Hb_001307_090 Hb_001307_090 Hb_000224_120--Hb_001307_090 Hb_000963_180 Hb_000963_180 Hb_000224_120--Hb_000963_180 Hb_002471_080 Hb_002471_080 Hb_000046_290--Hb_002471_080 Hb_001775_110 Hb_001775_110 Hb_000046_290--Hb_001775_110 Hb_001360_050 Hb_001360_050 Hb_000046_290--Hb_001360_050 Hb_008544_010 Hb_008544_010 Hb_000046_290--Hb_008544_010 Hb_001191_090 Hb_001191_090 Hb_000046_290--Hb_001191_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.5996 14.0401 39.5272 134.546 41.5613 179.804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
202.201 255.899 282.214 106.401 113.913

CAGE analysis