Hb_002016_120

Information

Type -
Description -
Location Contig2016: 120403-125148
Sequence    

Annotation

kegg
ID tcc:TCM_004634
description HSP20-like chaperones superfamily protein isoform 1
nr
ID XP_012082739.1
description PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
swissprot
ID Q6YYB0
description Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1
trembl
ID A0A067K8L4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13915 PE=4 SV=1
Gene Ontology
ID GO:0005829
description hsp20-like chaperones superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20506: 120485-125099 , PASA_asmbl_20507: 120485-121318 , PASA_asmbl_20508: 124682-124915
cDNA
(Sanger)
(ID:Location)		 023_P21.ab1: 120689-125099 , 026_K01.ab1: 120784-125092 , 041_L24.ab1: 120642-125099 , 047_P18.ab1: 120648-125099 , 052_E07.ab1: 120727-125099 , 053_P14.ab1: 120775-125099

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_120 0.0 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
2 Hb_008554_070 0.0690129831 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
3 Hb_024714_010 0.073816931 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
4 Hb_006541_010 0.0798819786 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
5 Hb_004800_120 0.0817723091 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
6 Hb_001235_030 0.0824551099 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
7 Hb_033153_060 0.087620588 - - Transcription elongation factor, putative [Ricinus communis]
8 Hb_000421_220 0.0892624592 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
9 Hb_001234_100 0.0900738233 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
10 Hb_017413_010 0.0908068379 - - -
11 Hb_006816_210 0.0922364921 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
12 Hb_003964_100 0.0925399619 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
13 Hb_004127_020 0.0929166307 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
14 Hb_000230_510 0.0933580463 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
15 Hb_003581_100 0.0936814888 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
16 Hb_005092_060 0.0965181598 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
17 Hb_025240_040 0.0968073731 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
18 Hb_012799_160 0.0968137421 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
19 Hb_005400_030 0.097143183 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
20 Hb_001421_060 0.0976398324 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002016_120 Hb_002016_120 Hb_008554_070 Hb_008554_070 Hb_002016_120--Hb_008554_070 Hb_024714_010 Hb_024714_010 Hb_002016_120--Hb_024714_010 Hb_006541_010 Hb_006541_010 Hb_002016_120--Hb_006541_010 Hb_004800_120 Hb_004800_120 Hb_002016_120--Hb_004800_120 Hb_001235_030 Hb_001235_030 Hb_002016_120--Hb_001235_030 Hb_033153_060 Hb_033153_060 Hb_002016_120--Hb_033153_060 Hb_008554_070--Hb_024714_010 Hb_020000_010 Hb_020000_010 Hb_008554_070--Hb_020000_010 Hb_008554_070--Hb_001235_030 Hb_025240_040 Hb_025240_040 Hb_008554_070--Hb_025240_040 Hb_011909_100 Hb_011909_100 Hb_008554_070--Hb_011909_100 Hb_024714_010--Hb_020000_010 Hb_006117_070 Hb_006117_070 Hb_024714_010--Hb_006117_070 Hb_024714_010--Hb_025240_040 Hb_024185_020 Hb_024185_020 Hb_024714_010--Hb_024185_020 Hb_006541_010--Hb_033153_060 Hb_001616_040 Hb_001616_040 Hb_006541_010--Hb_001616_040 Hb_004459_040 Hb_004459_040 Hb_006541_010--Hb_004459_040 Hb_007576_170 Hb_007576_170 Hb_006541_010--Hb_007576_170 Hb_011644_030 Hb_011644_030 Hb_006541_010--Hb_011644_030 Hb_007441_040 Hb_007441_040 Hb_006541_010--Hb_007441_040 Hb_001117_090 Hb_001117_090 Hb_004800_120--Hb_001117_090 Hb_005357_130 Hb_005357_130 Hb_004800_120--Hb_005357_130 Hb_000086_550 Hb_000086_550 Hb_004800_120--Hb_000086_550 Hb_006816_210 Hb_006816_210 Hb_004800_120--Hb_006816_210 Hb_004871_040 Hb_004871_040 Hb_004800_120--Hb_004871_040 Hb_005092_060 Hb_005092_060 Hb_001235_030--Hb_005092_060 Hb_001014_230 Hb_001014_230 Hb_001235_030--Hb_001014_230 Hb_114336_020 Hb_114336_020 Hb_001235_030--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_001235_030--Hb_011534_030 Hb_033153_060--Hb_004459_040 Hb_033153_060--Hb_007576_170 Hb_000042_200 Hb_000042_200 Hb_033153_060--Hb_000042_200 Hb_007065_010 Hb_007065_010 Hb_033153_060--Hb_007065_010 Hb_000789_230 Hb_000789_230 Hb_033153_060--Hb_000789_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
185.782 98.8281 131.975 283.185 205.357 468.765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
521.249 701.318 415.828 209.238 307.861

CAGE analysis