Hb_004871_040

Information

Type -
Description -
Location Contig4871: 25345-28696
Sequence    

Annotation

kegg
ID cit:102623271
description tRNA (guanine-N(7)-)-methyltransferase-like
nr
ID XP_012070319.1
description PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
swissprot
ID Q2JJQ0
description tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=trmB PE=3 SV=1
trembl
ID A0A0D2PEG4
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G250100 PE=4 SV=1
Gene Ontology
ID GO:0008176
description trna (guanine-n -)-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45060: 25781-26623 , PASA_asmbl_45061: 27161-28693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004871_040 0.0 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
2 Hb_001117_090 0.0863872094 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
3 Hb_002798_020 0.0901206887 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
4 Hb_009421_040 0.0906296107 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
5 Hb_004800_120 0.0942630259 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
6 Hb_003581_100 0.0953353881 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
7 Hb_087749_010 0.0963167884 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
8 Hb_007576_170 0.0985903274 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005357_130 0.1043297293 - - hypothetical protein L484_012905 [Morus notabilis]
10 Hb_021576_030 0.1043647612 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
11 Hb_004459_040 0.1049742261 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
12 Hb_001421_060 0.1066051767 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
13 Hb_033153_060 0.1066982532 - - Transcription elongation factor, putative [Ricinus communis]
14 Hb_003125_190 0.1079250931 - - hypothetical protein POPTR_0015s10960g [Populus trichocarpa]
15 Hb_000373_120 0.1081359482 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
16 Hb_003683_120 0.1090826834 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001016_030 0.1107878223 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
18 Hb_003226_100 0.1111694363 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
19 Hb_010068_020 0.1112108134 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
20 Hb_000840_180 0.112177522 - - protein BOLA2 [Jatropha curcas]

Gene co-expression network

sample Hb_004871_040 Hb_004871_040 Hb_001117_090 Hb_001117_090 Hb_004871_040--Hb_001117_090 Hb_002798_020 Hb_002798_020 Hb_004871_040--Hb_002798_020 Hb_009421_040 Hb_009421_040 Hb_004871_040--Hb_009421_040 Hb_004800_120 Hb_004800_120 Hb_004871_040--Hb_004800_120 Hb_003581_100 Hb_003581_100 Hb_004871_040--Hb_003581_100 Hb_087749_010 Hb_087749_010 Hb_004871_040--Hb_087749_010 Hb_000926_300 Hb_000926_300 Hb_001117_090--Hb_000926_300 Hb_003599_040 Hb_003599_040 Hb_001117_090--Hb_003599_040 Hb_000877_020 Hb_000877_020 Hb_001117_090--Hb_000877_020 Hb_000340_140 Hb_000340_140 Hb_001117_090--Hb_000340_140 Hb_001117_090--Hb_009421_040 Hb_001246_060 Hb_001246_060 Hb_001117_090--Hb_001246_060 Hb_007065_010 Hb_007065_010 Hb_002798_020--Hb_007065_010 Hb_007576_170 Hb_007576_170 Hb_002798_020--Hb_007576_170 Hb_000265_050 Hb_000265_050 Hb_002798_020--Hb_000265_050 Hb_003226_100 Hb_003226_100 Hb_002798_020--Hb_003226_100 Hb_004127_020 Hb_004127_020 Hb_002798_020--Hb_004127_020 Hb_002056_050 Hb_002056_050 Hb_002798_020--Hb_002056_050 Hb_005357_130 Hb_005357_130 Hb_009421_040--Hb_005357_130 Hb_002687_170 Hb_002687_170 Hb_009421_040--Hb_002687_170 Hb_000086_550 Hb_000086_550 Hb_009421_040--Hb_000086_550 Hb_003623_050 Hb_003623_050 Hb_009421_040--Hb_003623_050 Hb_005211_190 Hb_005211_190 Hb_009421_040--Hb_005211_190 Hb_002016_120 Hb_002016_120 Hb_004800_120--Hb_002016_120 Hb_004800_120--Hb_001117_090 Hb_004800_120--Hb_005357_130 Hb_004800_120--Hb_000086_550 Hb_006816_210 Hb_006816_210 Hb_004800_120--Hb_006816_210 Hb_000680_140 Hb_000680_140 Hb_003581_100--Hb_000680_140 Hb_001421_060 Hb_001421_060 Hb_003581_100--Hb_001421_060 Hb_005736_060 Hb_005736_060 Hb_003581_100--Hb_005736_060 Hb_024714_010 Hb_024714_010 Hb_003581_100--Hb_024714_010 Hb_009711_020 Hb_009711_020 Hb_003581_100--Hb_009711_020 Hb_011781_030 Hb_011781_030 Hb_003581_100--Hb_011781_030 Hb_000431_070 Hb_000431_070 Hb_087749_010--Hb_000431_070 Hb_002613_020 Hb_002613_020 Hb_087749_010--Hb_002613_020 Hb_087749_010--Hb_002798_020 Hb_087749_010--Hb_007065_010 Hb_003025_040 Hb_003025_040 Hb_087749_010--Hb_003025_040 Hb_033153_060 Hb_033153_060 Hb_087749_010--Hb_033153_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.51849 1.076 3.15385 3.06623 4.17299 5.76138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.4775 13.3024 3.93205 3.25021 5.57231

CAGE analysis