Hb_003581_100

Information

Type -
Description -
Location Contig3581: 69818-75310
Sequence    

Annotation

kegg
ID rcu:RCOM_0698140
description twin lov protein, putative
nr
ID XP_012091946.1
description PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
swissprot
ID O64511
description Protein TWIN LOV 1 OS=Arabidopsis thaliana GN=TLP1 PE=1 SV=2
trembl
ID A0A067JBQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21702 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein twin lov 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36934: 69835-75283 , PASA_asmbl_36935: 69820-74913 , PASA_asmbl_36936: 69835-73589 , PASA_asmbl_36937: 70545-70745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_100 0.0 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
2 Hb_000680_140 0.0877424933 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
3 Hb_001421_060 0.0899450978 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
4 Hb_005736_060 0.0923472373 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
5 Hb_024714_010 0.0927807791 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
6 Hb_009711_020 0.0931026802 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
7 Hb_011781_030 0.093324854 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
8 Hb_002016_120 0.0936814888 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
9 Hb_000479_090 0.0945274659 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
10 Hb_000979_200 0.0947350468 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
11 Hb_004871_040 0.0953353881 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
12 Hb_001454_260 0.0974625378 - - hypothetical protein RCOM_0681280 [Ricinus communis]
13 Hb_001117_090 0.0976149621 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
14 Hb_000340_140 0.0984004828 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
15 Hb_004800_120 0.099603993 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
16 Hb_000384_100 0.0996971281 - - hydrolase, putative [Ricinus communis]
17 Hb_006541_010 0.1001073923 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
18 Hb_033153_060 0.10018255 - - Transcription elongation factor, putative [Ricinus communis]
19 Hb_004127_020 0.1011398161 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
20 Hb_009421_040 0.1011445188 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]

Gene co-expression network

sample Hb_003581_100 Hb_003581_100 Hb_000680_140 Hb_000680_140 Hb_003581_100--Hb_000680_140 Hb_001421_060 Hb_001421_060 Hb_003581_100--Hb_001421_060 Hb_005736_060 Hb_005736_060 Hb_003581_100--Hb_005736_060 Hb_024714_010 Hb_024714_010 Hb_003581_100--Hb_024714_010 Hb_009711_020 Hb_009711_020 Hb_003581_100--Hb_009711_020 Hb_011781_030 Hb_011781_030 Hb_003581_100--Hb_011781_030 Hb_004459_040 Hb_004459_040 Hb_000680_140--Hb_004459_040 Hb_153112_030 Hb_153112_030 Hb_000680_140--Hb_153112_030 Hb_007576_170 Hb_007576_170 Hb_000680_140--Hb_007576_170 Hb_006541_010 Hb_006541_010 Hb_000680_140--Hb_006541_010 Hb_001616_040 Hb_001616_040 Hb_000680_140--Hb_001616_040 Hb_000668_040 Hb_000668_040 Hb_000680_140--Hb_000668_040 Hb_003599_040 Hb_003599_040 Hb_001421_060--Hb_003599_040 Hb_000373_120 Hb_000373_120 Hb_001421_060--Hb_000373_120 Hb_001016_030 Hb_001016_030 Hb_001421_060--Hb_001016_030 Hb_000103_090 Hb_000103_090 Hb_001421_060--Hb_000103_090 Hb_006816_530 Hb_006816_530 Hb_001421_060--Hb_006816_530 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040 Hb_000307_090 Hb_000307_090 Hb_005736_060--Hb_000307_090 Hb_159809_020 Hb_159809_020 Hb_005736_060--Hb_159809_020 Hb_005736_060--Hb_001421_060 Hb_004129_040 Hb_004129_040 Hb_005736_060--Hb_004129_040 Hb_005736_060--Hb_001616_040 Hb_002963_010 Hb_002963_010 Hb_005736_060--Hb_002963_010 Hb_008554_070 Hb_008554_070 Hb_024714_010--Hb_008554_070 Hb_020000_010 Hb_020000_010 Hb_024714_010--Hb_020000_010 Hb_002016_120 Hb_002016_120 Hb_024714_010--Hb_002016_120 Hb_006117_070 Hb_006117_070 Hb_024714_010--Hb_006117_070 Hb_025240_040 Hb_025240_040 Hb_024714_010--Hb_025240_040 Hb_024185_020 Hb_024185_020 Hb_024714_010--Hb_024185_020 Hb_000030_290 Hb_000030_290 Hb_009711_020--Hb_000030_290 Hb_002609_210 Hb_002609_210 Hb_009711_020--Hb_002609_210 Hb_009711_020--Hb_001616_040 Hb_000334_210 Hb_000334_210 Hb_009711_020--Hb_000334_210 Hb_002477_140 Hb_002477_140 Hb_009711_020--Hb_002477_140 Hb_004871_020 Hb_004871_020 Hb_009711_020--Hb_004871_020 Hb_000483_410 Hb_000483_410 Hb_011781_030--Hb_000483_410 Hb_018133_060 Hb_018133_060 Hb_011781_030--Hb_018133_060 Hb_143629_230 Hb_143629_230 Hb_011781_030--Hb_143629_230 Hb_000840_030 Hb_000840_030 Hb_011781_030--Hb_000840_030 Hb_000340_140 Hb_000340_140 Hb_011781_030--Hb_000340_140 Hb_000317_340 Hb_000317_340 Hb_011781_030--Hb_000317_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0908 6.88098 5.05763 7.52468 8.34279 15.5918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.8999 29.0864 12.5746 7.97651 13.2984

CAGE analysis