Hb_008554_070

Information

Type -
Description -
Location Contig8554: 44166-52565
Sequence    

Annotation

kegg
ID rcu:RCOM_0571710
description amino acid transporter, putative
nr
ID XP_012072551.1
description PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
swissprot
ID Q8S9K7
description Peroxisome biogenesis protein 3-2 OS=Arabidopsis thaliana GN=PEX3-2 PE=2 SV=1
trembl
ID A0A067KP45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05346 PE=4 SV=1
Gene Ontology
ID GO:0005779
description peroxisome biogenesis protein 3-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60542: 44157-52283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008554_070 0.0 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
2 Hb_024714_010 0.044403366 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
3 Hb_002016_120 0.0690129831 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
4 Hb_020000_010 0.0794027373 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
5 Hb_001235_030 0.0799450862 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
6 Hb_025240_040 0.0820401811 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
7 Hb_011909_100 0.0870646052 - - conserved hypothetical protein [Ricinus communis]
8 Hb_116894_020 0.0882230582 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
9 Hb_000421_220 0.0941156669 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
10 Hb_024185_020 0.0948105745 - - -
11 Hb_138585_050 0.0948605589 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
12 Hb_012799_160 0.0953412361 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
13 Hb_006117_070 0.0961460674 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
14 Hb_000236_070 0.0961534468 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002205_070 0.0968285114 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
16 Hb_001083_020 0.0971822937 - - -
17 Hb_012675_050 0.0990228943 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000230_510 0.0992038631 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
19 Hb_001789_070 0.0992334265 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
20 Hb_001234_100 0.1002952999 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008554_070 Hb_008554_070 Hb_024714_010 Hb_024714_010 Hb_008554_070--Hb_024714_010 Hb_002016_120 Hb_002016_120 Hb_008554_070--Hb_002016_120 Hb_020000_010 Hb_020000_010 Hb_008554_070--Hb_020000_010 Hb_001235_030 Hb_001235_030 Hb_008554_070--Hb_001235_030 Hb_025240_040 Hb_025240_040 Hb_008554_070--Hb_025240_040 Hb_011909_100 Hb_011909_100 Hb_008554_070--Hb_011909_100 Hb_024714_010--Hb_020000_010 Hb_024714_010--Hb_002016_120 Hb_006117_070 Hb_006117_070 Hb_024714_010--Hb_006117_070 Hb_024714_010--Hb_025240_040 Hb_024185_020 Hb_024185_020 Hb_024714_010--Hb_024185_020 Hb_006541_010 Hb_006541_010 Hb_002016_120--Hb_006541_010 Hb_004800_120 Hb_004800_120 Hb_002016_120--Hb_004800_120 Hb_002016_120--Hb_001235_030 Hb_033153_060 Hb_033153_060 Hb_002016_120--Hb_033153_060 Hb_020000_010--Hb_024185_020 Hb_001360_050 Hb_001360_050 Hb_020000_010--Hb_001360_050 Hb_011671_220 Hb_011671_220 Hb_020000_010--Hb_011671_220 Hb_002759_060 Hb_002759_060 Hb_020000_010--Hb_002759_060 Hb_005092_060 Hb_005092_060 Hb_001235_030--Hb_005092_060 Hb_001014_230 Hb_001014_230 Hb_001235_030--Hb_001014_230 Hb_114336_020 Hb_114336_020 Hb_001235_030--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_001235_030--Hb_011534_030 Hb_004218_110 Hb_004218_110 Hb_025240_040--Hb_004218_110 Hb_004254_120 Hb_004254_120 Hb_025240_040--Hb_004254_120 Hb_015934_070 Hb_015934_070 Hb_025240_040--Hb_015934_070 Hb_127552_030 Hb_127552_030 Hb_025240_040--Hb_127552_030 Hb_025240_040--Hb_002759_060 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220 Hb_012675_050 Hb_012675_050 Hb_011909_100--Hb_012675_050 Hb_001083_020 Hb_001083_020 Hb_011909_100--Hb_001083_020 Hb_001775_110 Hb_001775_110 Hb_011909_100--Hb_001775_110 Hb_103118_010 Hb_103118_010 Hb_011909_100--Hb_103118_010 Hb_000962_040 Hb_000962_040 Hb_011909_100--Hb_000962_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.50199 1.63171 2.37373 3.97524 4.31604 8.24741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.24486 10.0544 8.29281 3.3666 6.7284

CAGE analysis