Hb_011671_220

Information

Type -
Description -
Location Contig11671: 189612-193468
Sequence    

Annotation

kegg
ID rcu:RCOM_1501440
description hypothetical protein
nr
ID XP_002511005.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9W6I0
description Ubiquinol-cytochrome-c reductase complex assembly factor 1 OS=Xenopus laevis GN=uqcc1 PE=2 SV=1
trembl
ID B9R9Y0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1501440 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ubiquinol-cytochrome-c reductase complex assembly factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05148: 188677-193420 , PASA_asmbl_05149: 188927-191408 , PASA_asmbl_05151: 189613-190226 , PASA_asmbl_05152: 194135-196393
cDNA
(Sanger)
(ID:Location)		 014_H17.ab1: 192008-193420

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005117_010 0.0760760866 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
3 Hb_020000_010 0.0814764209 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
4 Hb_000230_540 0.0858728569 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
5 Hb_004055_140 0.0865526027 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
6 Hb_010436_060 0.0883658334 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
7 Hb_002551_020 0.0927959389 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
8 Hb_004109_190 0.0937719705 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
9 Hb_005398_030 0.1016219232 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
10 Hb_000963_190 0.1020067205 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
11 Hb_024714_010 0.1060105329 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
12 Hb_006641_010 0.10624709 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
13 Hb_000029_020 0.1082068462 - - Vesicle-associated membrane protein, putative [Ricinus communis]
14 Hb_000380_010 0.1087090569 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
15 Hb_001235_070 0.1090165193 - - conserved hypothetical protein [Ricinus communis]
16 Hb_022092_090 0.1101041508 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
17 Hb_183086_060 0.1101075785 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
18 Hb_001173_040 0.1112731599 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_003964_100 0.1115428971 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
20 Hb_000751_130 0.1116144417 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]

Gene co-expression network

sample Hb_011671_220 Hb_011671_220 Hb_005117_010 Hb_005117_010 Hb_011671_220--Hb_005117_010 Hb_020000_010 Hb_020000_010 Hb_011671_220--Hb_020000_010 Hb_000230_540 Hb_000230_540 Hb_011671_220--Hb_000230_540 Hb_004055_140 Hb_004055_140 Hb_011671_220--Hb_004055_140 Hb_010436_060 Hb_010436_060 Hb_011671_220--Hb_010436_060 Hb_002551_020 Hb_002551_020 Hb_011671_220--Hb_002551_020 Hb_005117_010--Hb_000230_540 Hb_005117_010--Hb_004055_140 Hb_006641_010 Hb_006641_010 Hb_005117_010--Hb_006641_010 Hb_005117_010--Hb_010436_060 Hb_000914_070 Hb_000914_070 Hb_005117_010--Hb_000914_070 Hb_024714_010 Hb_024714_010 Hb_020000_010--Hb_024714_010 Hb_024185_020 Hb_024185_020 Hb_020000_010--Hb_024185_020 Hb_008554_070 Hb_008554_070 Hb_020000_010--Hb_008554_070 Hb_001360_050 Hb_001360_050 Hb_020000_010--Hb_001360_050 Hb_002759_060 Hb_002759_060 Hb_020000_010--Hb_002759_060 Hb_004032_100 Hb_004032_100 Hb_000230_540--Hb_004032_100 Hb_000024_080 Hb_000024_080 Hb_000230_540--Hb_000024_080 Hb_000751_130 Hb_000751_130 Hb_000230_540--Hb_000751_130 Hb_148209_080 Hb_148209_080 Hb_000230_540--Hb_148209_080 Hb_000205_270 Hb_000205_270 Hb_000230_540--Hb_000205_270 Hb_002616_050 Hb_002616_050 Hb_004055_140--Hb_002616_050 Hb_028872_140 Hb_028872_140 Hb_004055_140--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_004055_140--Hb_033642_010 Hb_001454_140 Hb_001454_140 Hb_004055_140--Hb_001454_140 Hb_001266_080 Hb_001266_080 Hb_004055_140--Hb_001266_080 Hb_010436_060--Hb_006641_010 Hb_003964_100 Hb_003964_100 Hb_010436_060--Hb_003964_100 Hb_001235_030 Hb_001235_030 Hb_010436_060--Hb_001235_030 Hb_001073_050 Hb_001073_050 Hb_010436_060--Hb_001073_050 Hb_168773_010 Hb_168773_010 Hb_002551_020--Hb_168773_010 Hb_004109_190 Hb_004109_190 Hb_002551_020--Hb_004109_190 Hb_000029_020 Hb_000029_020 Hb_002551_020--Hb_000029_020 Hb_002496_050 Hb_002496_050 Hb_002551_020--Hb_002496_050 Hb_000061_320 Hb_000061_320 Hb_002551_020--Hb_000061_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8196 2.88445 3.59192 7.14056 16.0339 36.0186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.2898 25.5787 27.2191 12.8926 11.9813

CAGE analysis