Hb_001073_050

Information

Type -
Description -
Location Contig1073: 43136-47148
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001073_050 0.0 - - -
2 Hb_010436_060 0.0886897732 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
3 Hb_004056_030 0.0975957456 - - hypothetical protein 33 [Hevea brasiliensis]
4 Hb_023292_010 0.1005341878 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_002603_160 0.1025942249 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
6 Hb_064441_010 0.1040809349 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
7 Hb_001357_080 0.1048916581 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
8 Hb_114336_020 0.113786061 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
9 Hb_154648_010 0.1141038957 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
10 Hb_006641_010 0.1154127859 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
11 Hb_001235_030 0.1161443526 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
12 Hb_000046_290 0.1177430312 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
13 Hb_005625_020 0.1185973589 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
14 Hb_092107_010 0.1186880087 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005188_090 0.1198768989 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
16 Hb_001141_280 0.1216077985 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
17 Hb_006472_050 0.1217447646 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
18 Hb_029866_070 0.1262089155 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
19 Hb_009666_040 0.1272256475 - - glutathione transferase, putative [Ricinus communis]
20 Hb_000363_160 0.1273665346 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]

Gene co-expression network

sample Hb_001073_050 Hb_001073_050 Hb_010436_060 Hb_010436_060 Hb_001073_050--Hb_010436_060 Hb_004056_030 Hb_004056_030 Hb_001073_050--Hb_004056_030 Hb_023292_010 Hb_023292_010 Hb_001073_050--Hb_023292_010 Hb_002603_160 Hb_002603_160 Hb_001073_050--Hb_002603_160 Hb_064441_010 Hb_064441_010 Hb_001073_050--Hb_064441_010 Hb_001357_080 Hb_001357_080 Hb_001073_050--Hb_001357_080 Hb_006641_010 Hb_006641_010 Hb_010436_060--Hb_006641_010 Hb_003964_100 Hb_003964_100 Hb_010436_060--Hb_003964_100 Hb_011671_220 Hb_011671_220 Hb_010436_060--Hb_011671_220 Hb_001235_030 Hb_001235_030 Hb_010436_060--Hb_001235_030 Hb_005117_010 Hb_005117_010 Hb_010436_060--Hb_005117_010 Hb_114336_020 Hb_114336_020 Hb_004056_030--Hb_114336_020 Hb_092107_010 Hb_092107_010 Hb_004056_030--Hb_092107_010 Hb_000260_570 Hb_000260_570 Hb_004056_030--Hb_000260_570 Hb_004056_030--Hb_064441_010 Hb_006472_050 Hb_006472_050 Hb_004056_030--Hb_006472_050 Hb_023292_010--Hb_001357_080 Hb_003018_190 Hb_003018_190 Hb_023292_010--Hb_003018_190 Hb_023292_010--Hb_002603_160 Hb_006935_050 Hb_006935_050 Hb_023292_010--Hb_006935_050 Hb_100804_010 Hb_100804_010 Hb_023292_010--Hb_100804_010 Hb_131864_040 Hb_131864_040 Hb_002603_160--Hb_131864_040 Hb_002603_160--Hb_003018_190 Hb_006846_110 Hb_006846_110 Hb_002603_160--Hb_006846_110 Hb_005188_090 Hb_005188_090 Hb_002603_160--Hb_005188_090 Hb_000223_150 Hb_000223_150 Hb_002603_160--Hb_000223_150 Hb_001141_280 Hb_001141_280 Hb_002603_160--Hb_001141_280 Hb_064441_010--Hb_001235_030 Hb_002005_020 Hb_002005_020 Hb_064441_010--Hb_002005_020 Hb_006429_010 Hb_006429_010 Hb_064441_010--Hb_006429_010 Hb_000482_090 Hb_000482_090 Hb_064441_010--Hb_000482_090 Hb_064441_010--Hb_010436_060 Hb_004079_030 Hb_004079_030 Hb_064441_010--Hb_004079_030 Hb_002539_090 Hb_002539_090 Hb_001357_080--Hb_002539_090 Hb_000046_110 Hb_000046_110 Hb_001357_080--Hb_000046_110 Hb_001357_080--Hb_010436_060 Hb_000751_130 Hb_000751_130 Hb_001357_080--Hb_000751_130 Hb_001357_080--Hb_006641_010 Hb_029866_070 Hb_029866_070 Hb_001357_080--Hb_029866_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.71575 0.373501 0.518916 0.982624 1.31306 2.77334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.23999 2.7264 5.00443 1.06376 1.1977

CAGE analysis