Hb_006641_010

Information

Type -
Description -
Location Contig6641: 8230-22625
Sequence    

Annotation

kegg
ID cmo:103503101
description uncharacterized LOC103503101
nr
ID XP_009768808.1
description PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0B0PHM9
description Pyridoxal-phosphate-dependent serine hydroxymethyltransferase OS=Gossypium arboreum GN=F383_30526 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53146: 8009-17706 , PASA_asmbl_53147: 8009-15855 , PASA_asmbl_53148: 11994-12211
cDNA
(Sanger)
(ID:Location)		 017_O13.ab1: 8009-8251

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006641_010 0.0 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
2 Hb_010436_060 0.0584006542 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
3 Hb_005117_010 0.0869419397 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
4 Hb_074979_020 0.090834259 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000028_140 0.0918709016 - - surfeit locus protein, putative [Ricinus communis]
6 Hb_001155_030 0.0925654595 - - 60S ribosomal protein L10A [Hevea brasiliensis]
7 Hb_002759_060 0.0938949402 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
8 Hb_005092_060 0.0953217109 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
9 Hb_009666_040 0.0987697255 - - glutathione transferase, putative [Ricinus communis]
10 Hb_001357_080 0.0991261676 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
11 Hb_000751_130 0.0998298951 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
12 Hb_154648_010 0.0999400969 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
13 Hb_180301_010 0.101677391 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
14 Hb_037887_010 0.1020509282 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
15 Hb_001235_030 0.1035228191 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
16 Hb_000230_540 0.1044206464 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
17 Hb_000898_050 0.1053328775 - - -
18 Hb_064441_010 0.1058048569 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
19 Hb_011671_220 0.10624709 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001242_110 0.1063596594 - - 40S ribosomal protein S18, putative [Ricinus communis]

Gene co-expression network

sample Hb_006641_010 Hb_006641_010 Hb_010436_060 Hb_010436_060 Hb_006641_010--Hb_010436_060 Hb_005117_010 Hb_005117_010 Hb_006641_010--Hb_005117_010 Hb_074979_020 Hb_074979_020 Hb_006641_010--Hb_074979_020 Hb_000028_140 Hb_000028_140 Hb_006641_010--Hb_000028_140 Hb_001155_030 Hb_001155_030 Hb_006641_010--Hb_001155_030 Hb_002759_060 Hb_002759_060 Hb_006641_010--Hb_002759_060 Hb_003964_100 Hb_003964_100 Hb_010436_060--Hb_003964_100 Hb_011671_220 Hb_011671_220 Hb_010436_060--Hb_011671_220 Hb_001235_030 Hb_001235_030 Hb_010436_060--Hb_001235_030 Hb_001073_050 Hb_001073_050 Hb_010436_060--Hb_001073_050 Hb_010436_060--Hb_005117_010 Hb_005117_010--Hb_011671_220 Hb_000230_540 Hb_000230_540 Hb_005117_010--Hb_000230_540 Hb_004055_140 Hb_004055_140 Hb_005117_010--Hb_004055_140 Hb_000914_070 Hb_000914_070 Hb_005117_010--Hb_000914_070 Hb_000856_260 Hb_000856_260 Hb_074979_020--Hb_000856_260 Hb_012675_070 Hb_012675_070 Hb_074979_020--Hb_012675_070 Hb_001242_110 Hb_001242_110 Hb_074979_020--Hb_001242_110 Hb_037887_010 Hb_037887_010 Hb_074979_020--Hb_037887_010 Hb_074979_020--Hb_001155_030 Hb_027073_040 Hb_027073_040 Hb_000028_140--Hb_027073_040 Hb_000028_140--Hb_001242_110 Hb_000239_010 Hb_000239_010 Hb_000028_140--Hb_000239_010 Hb_000028_140--Hb_001155_030 Hb_000227_230 Hb_000227_230 Hb_000028_140--Hb_000227_230 Hb_003996_020 Hb_003996_020 Hb_000028_140--Hb_003996_020 Hb_001829_060 Hb_001829_060 Hb_001155_030--Hb_001829_060 Hb_001155_030--Hb_001242_110 Hb_005731_170 Hb_005731_170 Hb_001155_030--Hb_005731_170 Hb_009666_040 Hb_009666_040 Hb_001155_030--Hb_009666_040 Hb_004218_110 Hb_004218_110 Hb_002759_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_002759_060--Hb_027073_040 Hb_002759_060--Hb_003996_020 Hb_025240_040 Hb_025240_040 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.457103 0.207433 0.236859 0.531591 0.443896 1.68511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24966 1.44382 1.60267 0.737925 0.445809

CAGE analysis