Hb_004218_110

Information

Type -
Description -
Location Contig4218: 110316-116214
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006329mg
description hypothetical protein
nr
ID XP_007218071.1
description hypothetical protein PRUPE_ppa006329mg [Prunus persica]
swissprot
ID Q5E9B4
description Translation initiation factor eIF-2B subunit beta OS=Bos taurus GN=EIF2B2 PE=2 SV=1
trembl
ID M5X1B4
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006329mg PE=3 SV=1
Gene Ontology
ID GO:0003743
description translation initiation factor eif-2b subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41666: 110392-116031 , PASA_asmbl_41667: 110392-116122 , PASA_asmbl_41668: 110449-116099 , PASA_asmbl_41669: 110718-111484 , PASA_asmbl_41670: 111769-111894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_110 0.0 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
2 Hb_002759_060 0.0484363584 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
3 Hb_025240_040 0.0542122899 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
4 Hb_001369_690 0.0592381379 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
5 Hb_004254_120 0.0596449915 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000120_460 0.0700452713 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
7 Hb_002005_020 0.071636016 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003125_010 0.0727099102 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
9 Hb_005092_060 0.0750672254 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
10 Hb_000058_060 0.0756133371 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
11 Hb_005289_030 0.0758124503 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
12 Hb_000041_050 0.0771331385 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
13 Hb_002061_040 0.0777660815 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
14 Hb_000976_410 0.078740478 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
15 Hb_000477_060 0.0790760617 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
16 Hb_000023_090 0.0794955818 - - mak, putative [Ricinus communis]
17 Hb_004920_120 0.0797640608 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003697_040 0.0799301671 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
19 Hb_001360_050 0.0806787581 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
20 Hb_005305_080 0.0809896944 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004218_110 Hb_004218_110 Hb_002759_060 Hb_002759_060 Hb_004218_110--Hb_002759_060 Hb_025240_040 Hb_025240_040 Hb_004218_110--Hb_025240_040 Hb_001369_690 Hb_001369_690 Hb_004218_110--Hb_001369_690 Hb_004254_120 Hb_004254_120 Hb_004218_110--Hb_004254_120 Hb_000120_460 Hb_000120_460 Hb_004218_110--Hb_000120_460 Hb_002005_020 Hb_002005_020 Hb_004218_110--Hb_002005_020 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_025240_040--Hb_004254_120 Hb_015934_070 Hb_015934_070 Hb_025240_040--Hb_015934_070 Hb_127552_030 Hb_127552_030 Hb_025240_040--Hb_127552_030 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220 Hb_003125_010 Hb_003125_010 Hb_001369_690--Hb_003125_010 Hb_000331_450 Hb_000331_450 Hb_001369_690--Hb_000331_450 Hb_001369_690--Hb_015934_070 Hb_012053_070 Hb_012053_070 Hb_001369_690--Hb_012053_070 Hb_001369_690--Hb_025240_040 Hb_032202_190 Hb_032202_190 Hb_004254_120--Hb_032202_190 Hb_005618_170 Hb_005618_170 Hb_004254_120--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_004254_120--Hb_005305_080 Hb_000206_210 Hb_000206_210 Hb_004254_120--Hb_000206_210 Hb_000876_070 Hb_000876_070 Hb_004254_120--Hb_000876_070 Hb_000928_210 Hb_000928_210 Hb_004254_120--Hb_000928_210 Hb_000976_170 Hb_000976_170 Hb_000120_460--Hb_000976_170 Hb_000120_460--Hb_025240_040 Hb_003697_040 Hb_003697_040 Hb_000120_460--Hb_003697_040 Hb_108350_010 Hb_108350_010 Hb_000120_460--Hb_108350_010 Hb_001545_170 Hb_001545_170 Hb_000120_460--Hb_001545_170 Hb_000023_090 Hb_000023_090 Hb_002005_020--Hb_000023_090 Hb_002005_020--Hb_002759_060 Hb_011953_020 Hb_011953_020 Hb_002005_020--Hb_011953_020 Hb_000567_120 Hb_000567_120 Hb_002005_020--Hb_000567_120 Hb_001519_050 Hb_001519_050 Hb_002005_020--Hb_001519_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5747 14.5939 10.203 22.1177 20.5733 37.3329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.3843 42.1691 44.0852 28.9997 20.6064

CAGE analysis