Hb_004055_140

Information

Type -
Description -
Location Contig4055: 105193-108716
Sequence    

Annotation

kegg
ID rcu:RCOM_0655610
description Heterogeneous nuclear ribonucleoprotein A1, putative
nr
ID XP_012068958.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
swissprot
ID Q8W034
description Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1
trembl
ID A0A067L8F2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24754 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40222: 105249-108511
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_140 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
2 Hb_002616_050 0.0794566696 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
3 Hb_028872_140 0.0810180803 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
4 Hb_033642_010 0.0828425847 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
5 Hb_005117_010 0.0834326677 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
6 Hb_001454_140 0.0844625951 - - protein arginine n-methyltransferase, putative [Ricinus communis]
7 Hb_001266_080 0.0853004943 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
8 Hb_007426_030 0.0857246596 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
9 Hb_011671_220 0.0865526027 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004128_190 0.087033583 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
11 Hb_071736_010 0.0903639127 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
12 Hb_001054_130 0.0931853395 - - Protein SSU72, putative [Ricinus communis]
13 Hb_000483_200 0.0931871098 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
14 Hb_012305_050 0.0936214462 - - unnamed protein product [Coffea canephora]
15 Hb_009111_050 0.094692552 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
16 Hb_000103_180 0.0952192286 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
17 Hb_011310_070 0.0953211195 - - ADP,ATP carrier protein, putative [Ricinus communis]
18 Hb_004109_190 0.0961688709 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
19 Hb_007441_120 0.0972180779 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
20 Hb_000175_070 0.0976606079 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004055_140 Hb_004055_140 Hb_002616_050 Hb_002616_050 Hb_004055_140--Hb_002616_050 Hb_028872_140 Hb_028872_140 Hb_004055_140--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_004055_140--Hb_033642_010 Hb_005117_010 Hb_005117_010 Hb_004055_140--Hb_005117_010 Hb_001454_140 Hb_001454_140 Hb_004055_140--Hb_001454_140 Hb_001266_080 Hb_001266_080 Hb_004055_140--Hb_001266_080 Hb_000363_500 Hb_000363_500 Hb_002616_050--Hb_000363_500 Hb_000023_140 Hb_000023_140 Hb_002616_050--Hb_000023_140 Hb_004072_020 Hb_004072_020 Hb_002616_050--Hb_004072_020 Hb_005063_040 Hb_005063_040 Hb_002616_050--Hb_005063_040 Hb_003001_120 Hb_003001_120 Hb_002616_050--Hb_003001_120 Hb_000889_020 Hb_000889_020 Hb_002616_050--Hb_000889_020 Hb_001454_210 Hb_001454_210 Hb_028872_140--Hb_001454_210 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_028872_140--Hb_033642_010 Hb_009111_050 Hb_009111_050 Hb_028872_140--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020 Hb_033642_010--Hb_009111_050 Hb_002030_030 Hb_002030_030 Hb_033642_010--Hb_002030_030 Hb_001720_050 Hb_001720_050 Hb_033642_010--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_033642_010--Hb_000062_240 Hb_003777_270 Hb_003777_270 Hb_033642_010--Hb_003777_270 Hb_011671_220 Hb_011671_220 Hb_005117_010--Hb_011671_220 Hb_000230_540 Hb_000230_540 Hb_005117_010--Hb_000230_540 Hb_006641_010 Hb_006641_010 Hb_005117_010--Hb_006641_010 Hb_010436_060 Hb_010436_060 Hb_005117_010--Hb_010436_060 Hb_000914_070 Hb_000914_070 Hb_005117_010--Hb_000914_070 Hb_001246_100 Hb_001246_100 Hb_001454_140--Hb_001246_100 Hb_007101_100 Hb_007101_100 Hb_001454_140--Hb_007101_100 Hb_004374_200 Hb_004374_200 Hb_001454_140--Hb_004374_200 Hb_002686_270 Hb_002686_270 Hb_001454_140--Hb_002686_270 Hb_001454_140--Hb_033642_010 Hb_002374_160 Hb_002374_160 Hb_001454_140--Hb_002374_160 Hb_071736_010 Hb_071736_010 Hb_001266_080--Hb_071736_010 Hb_001124_080 Hb_001124_080 Hb_001266_080--Hb_001124_080 Hb_007426_030 Hb_007426_030 Hb_001266_080--Hb_007426_030 Hb_009117_030 Hb_009117_030 Hb_001266_080--Hb_009117_030 Hb_001266_080--Hb_000914_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.3818 10.8718 8.36824 14.5089 26.1077 67.8022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.0951 40.569 39.9159 25.1306 16.2058

CAGE analysis