Hb_004056_030

Information

Type -
Description -
Location Contig4056: 42391-52269
Sequence    

Annotation

kegg
ID rcu:RCOM_0954650
description hypothetical protein
nr
ID ADR71312.1
description hypothetical protein 33 [Hevea brasiliensis]
swissprot
ID Q941A6
description Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana GN=SDH6 PE=1 SV=1
trembl
ID I3NMS5
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40233: 42504-52256 , PASA_asmbl_40234: 47287-47530
cDNA
(Sanger)
(ID:Location)		 012_G16.ab1: 42504-52257 , 015_G01.ab1: 42617-52256 , 031_J03.ab1: 42617-52256 , 033_L17.ab1: 42504-52251

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004056_030 0.0 - - hypothetical protein 33 [Hevea brasiliensis]
2 Hb_114336_020 0.0941106729 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
3 Hb_092107_010 0.0968170355 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001073_050 0.0975957456 - - -
5 Hb_000260_570 0.0989491294 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_064441_010 0.1015962078 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
7 Hb_006472_050 0.1087422174 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
8 Hb_001235_030 0.1109049341 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
9 Hb_000046_290 0.1123199866 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
10 Hb_009393_210 0.1176716142 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
11 Hb_093458_050 0.1179253662 - - glutathione reductase [Hevea brasiliensis]
12 Hb_011534_030 0.1198565342 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
13 Hb_001114_130 0.1208164042 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
14 Hb_001014_230 0.1212330717 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
15 Hb_004079_030 0.1226614242 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
16 Hb_011953_020 0.1228027052 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
17 Hb_000922_390 0.1229293553 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
18 Hb_011537_110 0.1238997069 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
19 Hb_002005_020 0.1249407071 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002239_060 0.1252039493 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004056_030 Hb_004056_030 Hb_114336_020 Hb_114336_020 Hb_004056_030--Hb_114336_020 Hb_092107_010 Hb_092107_010 Hb_004056_030--Hb_092107_010 Hb_001073_050 Hb_001073_050 Hb_004056_030--Hb_001073_050 Hb_000260_570 Hb_000260_570 Hb_004056_030--Hb_000260_570 Hb_064441_010 Hb_064441_010 Hb_004056_030--Hb_064441_010 Hb_006472_050 Hb_006472_050 Hb_004056_030--Hb_006472_050 Hb_001235_030 Hb_001235_030 Hb_114336_020--Hb_001235_030 Hb_172932_010 Hb_172932_010 Hb_114336_020--Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_114336_020--Hb_011534_030 Hb_001775_110 Hb_001775_110 Hb_114336_020--Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_114336_020--Hb_000398_040 Hb_027625_010 Hb_027625_010 Hb_114336_020--Hb_027625_010 Hb_001014_230 Hb_001014_230 Hb_092107_010--Hb_001014_230 Hb_001294_010 Hb_001294_010 Hb_092107_010--Hb_001294_010 Hb_092107_010--Hb_114336_020 Hb_092107_010--Hb_000260_570 Hb_002182_030 Hb_002182_030 Hb_092107_010--Hb_002182_030 Hb_010436_060 Hb_010436_060 Hb_001073_050--Hb_010436_060 Hb_023292_010 Hb_023292_010 Hb_001073_050--Hb_023292_010 Hb_002603_160 Hb_002603_160 Hb_001073_050--Hb_002603_160 Hb_001073_050--Hb_064441_010 Hb_001357_080 Hb_001357_080 Hb_001073_050--Hb_001357_080 Hb_005162_070 Hb_005162_070 Hb_000260_570--Hb_005162_070 Hb_001493_180 Hb_001493_180 Hb_000260_570--Hb_001493_180 Hb_001090_050 Hb_001090_050 Hb_000260_570--Hb_001090_050 Hb_002027_040 Hb_002027_040 Hb_000260_570--Hb_002027_040 Hb_010608_050 Hb_010608_050 Hb_000260_570--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_000260_570--Hb_000617_150 Hb_064441_010--Hb_001235_030 Hb_002005_020 Hb_002005_020 Hb_064441_010--Hb_002005_020 Hb_006429_010 Hb_006429_010 Hb_064441_010--Hb_006429_010 Hb_000482_090 Hb_000482_090 Hb_064441_010--Hb_000482_090 Hb_064441_010--Hb_010436_060 Hb_004079_030 Hb_004079_030 Hb_064441_010--Hb_004079_030 Hb_006472_050--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_006472_050--Hb_001135_210 Hb_000963_180 Hb_000963_180 Hb_006472_050--Hb_000963_180 Hb_000224_120 Hb_000224_120 Hb_006472_050--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_006472_050--Hb_000046_290 Hb_001153_060 Hb_001153_060 Hb_006472_050--Hb_001153_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5958 10.4591 16.7776 47.4743 38.3843 59.5809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.0277 90.1526 177.355 49.2002 54.8973

CAGE analysis