Hb_001493_180

Information

Type -
Description -
Location Contig1493: 126883-139440
Sequence    

Annotation

kegg
ID rcu:RCOM_0417950
description fyve finger-containing phosphoinositide kinase, fyv1, putative (EC:2.7.1.150)
nr
ID XP_002532951.1
description fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
swissprot
ID Q9LUM0
description 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana GN=FAB1B PE=2 SV=1
trembl
ID B9T3Y2
description Fyve finger-containing phosphoinositide kinase, fyv1, putative OS=Ricinus communis GN=RCOM_0417950 PE=4 SV=1
Gene Ontology
ID GO:0005739
description 1-phosphatidylinositol-3-phosphate 5-kinase fab1b-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12451: 128069-130499 , PASA_asmbl_12452: 131213-131673 , PASA_asmbl_12453: 131753-136543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_180 0.0 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
2 Hb_001090_050 0.0709723281 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
3 Hb_000260_570 0.0897819275 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_005162_070 0.0986218841 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001817_020 0.098763097 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
6 Hb_001189_050 0.1062027226 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
7 Hb_011030_020 0.1063835295 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
8 Hb_004785_140 0.1082057592 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
9 Hb_005188_090 0.1143602825 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
10 Hb_004846_070 0.1156437477 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
11 Hb_000236_140 0.116332013 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
12 Hb_008695_100 0.1176054891 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
13 Hb_004079_030 0.1197493615 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
14 Hb_010608_050 0.1212861371 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
15 Hb_007416_270 0.122010526 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
16 Hb_002027_040 0.122796282 - - synapse-associated protein, putative [Ricinus communis]
17 Hb_000359_010 0.1243803188 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
18 Hb_001140_220 0.1245942704 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_002307_170 0.1261359454 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
20 Hb_000138_110 0.1287580368 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]

Gene co-expression network

sample Hb_001493_180 Hb_001493_180 Hb_001090_050 Hb_001090_050 Hb_001493_180--Hb_001090_050 Hb_000260_570 Hb_000260_570 Hb_001493_180--Hb_000260_570 Hb_005162_070 Hb_005162_070 Hb_001493_180--Hb_005162_070 Hb_001817_020 Hb_001817_020 Hb_001493_180--Hb_001817_020 Hb_001189_050 Hb_001189_050 Hb_001493_180--Hb_001189_050 Hb_011030_020 Hb_011030_020 Hb_001493_180--Hb_011030_020 Hb_004846_070 Hb_004846_070 Hb_001090_050--Hb_004846_070 Hb_001090_050--Hb_000260_570 Hb_011242_040 Hb_011242_040 Hb_001090_050--Hb_011242_040 Hb_000865_060 Hb_000865_060 Hb_001090_050--Hb_000865_060 Hb_001090_050--Hb_005162_070 Hb_000260_570--Hb_005162_070 Hb_002027_040 Hb_002027_040 Hb_000260_570--Hb_002027_040 Hb_010608_050 Hb_010608_050 Hb_000260_570--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_000260_570--Hb_000617_150 Hb_005162_070--Hb_002027_040 Hb_008695_100 Hb_008695_100 Hb_005162_070--Hb_008695_100 Hb_005162_070--Hb_011030_020 Hb_001140_220 Hb_001140_220 Hb_005162_070--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_005162_070--Hb_013607_040 Hb_001817_020--Hb_001090_050 Hb_000010_340 Hb_000010_340 Hb_001817_020--Hb_000010_340 Hb_000059_050 Hb_000059_050 Hb_001817_020--Hb_000059_050 Hb_001817_020--Hb_000260_570 Hb_015198_020 Hb_015198_020 Hb_001817_020--Hb_015198_020 Hb_001189_050--Hb_011030_020 Hb_000019_060 Hb_000019_060 Hb_001189_050--Hb_000019_060 Hb_001189_050--Hb_010608_050 Hb_025557_030 Hb_025557_030 Hb_001189_050--Hb_025557_030 Hb_001357_010 Hb_001357_010 Hb_001189_050--Hb_001357_010 Hb_011030_020--Hb_010608_050 Hb_002205_130 Hb_002205_130 Hb_011030_020--Hb_002205_130 Hb_011030_020--Hb_008695_100 Hb_011030_020--Hb_000617_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.17699 5.73958 1.97331 7.00665 6.30838 10.16
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.04063 12.2399 35.691 6.20985 10.9924

CAGE analysis