Hb_002205_130

Information

Type -
Description -
Location Contig2205: 115296-117451
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09700g
description POPTRDRAFT_419321; hypothetical protein
nr
ID KJB50549.1
description hypothetical protein B456_008G176100 [Gossypium raimondii]
swissprot
ID O04862
description Folate synthesis bifunctional protein, mitochondrial OS=Pisum sativum GN=MitHPPK/DHPS PE=1 SV=1
trembl
ID A0A0D2T297
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G176100 PE=4 SV=1
Gene Ontology
ID GO:0003848
description folic acid synthesis protein fol1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22723: 115058-115338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_130 0.0 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
2 Hb_011030_020 0.0869291643 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
3 Hb_012799_100 0.1010485339 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
4 Hb_005162_070 0.1084347251 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002284_200 0.1173110485 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
6 Hb_019263_020 0.1190484516 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
7 Hb_002027_040 0.1225842668 - - synapse-associated protein, putative [Ricinus communis]
8 Hb_001189_050 0.1226282052 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
9 Hb_001511_070 0.1233377683 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
10 Hb_005928_100 0.1266931764 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
11 Hb_005542_060 0.1274998411 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000617_150 0.1281661851 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
13 Hb_013607_040 0.1313313058 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
14 Hb_001279_340 0.1314506313 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
15 Hb_031862_110 0.1325762295 - - calcium-dependent protein kinase [Hevea brasiliensis]
16 Hb_000260_570 0.1326007272 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000366_090 0.1327316407 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
18 Hb_003994_190 0.1332546903 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000563_250 0.1335727605 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
20 Hb_000120_960 0.1341277103 - - isocitrate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002205_130 Hb_002205_130 Hb_011030_020 Hb_011030_020 Hb_002205_130--Hb_011030_020 Hb_012799_100 Hb_012799_100 Hb_002205_130--Hb_012799_100 Hb_005162_070 Hb_005162_070 Hb_002205_130--Hb_005162_070 Hb_002284_200 Hb_002284_200 Hb_002205_130--Hb_002284_200 Hb_019263_020 Hb_019263_020 Hb_002205_130--Hb_019263_020 Hb_002027_040 Hb_002027_040 Hb_002205_130--Hb_002027_040 Hb_011030_020--Hb_005162_070 Hb_001189_050 Hb_001189_050 Hb_011030_020--Hb_001189_050 Hb_010608_050 Hb_010608_050 Hb_011030_020--Hb_010608_050 Hb_008695_100 Hb_008695_100 Hb_011030_020--Hb_008695_100 Hb_000617_150 Hb_000617_150 Hb_011030_020--Hb_000617_150 Hb_000019_060 Hb_000019_060 Hb_012799_100--Hb_000019_060 Hb_012799_100--Hb_011030_020 Hb_012799_100--Hb_001189_050 Hb_003642_050 Hb_003642_050 Hb_012799_100--Hb_003642_050 Hb_168319_030 Hb_168319_030 Hb_012799_100--Hb_168319_030 Hb_005162_070--Hb_002027_040 Hb_000260_570 Hb_000260_570 Hb_005162_070--Hb_000260_570 Hb_005162_070--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_005162_070--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_005162_070--Hb_013607_040 Hb_002284_200--Hb_019263_020 Hb_000748_130 Hb_000748_130 Hb_002284_200--Hb_000748_130 Hb_001279_340 Hb_001279_340 Hb_002284_200--Hb_001279_340 Hb_000563_250 Hb_000563_250 Hb_002284_200--Hb_000563_250 Hb_000111_450 Hb_000111_450 Hb_002284_200--Hb_000111_450 Hb_000366_090 Hb_000366_090 Hb_002284_200--Hb_000366_090 Hb_019263_020--Hb_013607_040 Hb_002235_280 Hb_002235_280 Hb_019263_020--Hb_002235_280 Hb_003053_020 Hb_003053_020 Hb_019263_020--Hb_003053_020 Hb_011534_030 Hb_011534_030 Hb_019263_020--Hb_011534_030 Hb_000373_130 Hb_000373_130 Hb_019263_020--Hb_000373_130 Hb_020805_130 Hb_020805_130 Hb_002027_040--Hb_020805_130 Hb_004079_030 Hb_004079_030 Hb_002027_040--Hb_004079_030 Hb_000567_120 Hb_000567_120 Hb_002027_040--Hb_000567_120 Hb_148113_010 Hb_148113_010 Hb_002027_040--Hb_148113_010 Hb_002027_040--Hb_000260_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.327029 0.22396 0.270185 0.163922 0.215215 0.217687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.42744 0.739685 1.43527 0.350476 0.416454

CAGE analysis