Hb_000260_570

Information

Type -
Description -
Location Contig260: 385488-389297
Sequence    

Annotation

kegg
ID rcu:RCOM_1323900
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002519998.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q8L844
description Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1
trembl
ID B9S1X9
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1323900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27026: 386020-386517 , PASA_asmbl_27027: 386667-388760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_570 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_005162_070 0.0654562839 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001493_180 0.0897819275 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
4 Hb_001090_050 0.0905984348 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
5 Hb_002027_040 0.0912794485 - - synapse-associated protein, putative [Ricinus communis]
6 Hb_010608_050 0.0924592493 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
7 Hb_000617_150 0.0926182085 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
8 Hb_114336_020 0.0949002274 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
9 Hb_004079_030 0.0973567884 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
10 Hb_008695_100 0.0986029343 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
11 Hb_004056_030 0.0989491294 - - hypothetical protein 33 [Hevea brasiliensis]
12 Hb_172932_010 0.0995909592 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_092107_010 0.1003125666 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011534_030 0.1013988836 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
15 Hb_011030_020 0.1018048308 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
16 Hb_000359_010 0.1047699373 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
17 Hb_001811_030 0.1088621817 - - Beta-ureidopropionase, putative [Ricinus communis]
18 Hb_001140_220 0.1089553929 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_002307_170 0.1120118111 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
20 Hb_000567_120 0.1126662554 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]

Gene co-expression network

sample Hb_000260_570 Hb_000260_570 Hb_005162_070 Hb_005162_070 Hb_000260_570--Hb_005162_070 Hb_001493_180 Hb_001493_180 Hb_000260_570--Hb_001493_180 Hb_001090_050 Hb_001090_050 Hb_000260_570--Hb_001090_050 Hb_002027_040 Hb_002027_040 Hb_000260_570--Hb_002027_040 Hb_010608_050 Hb_010608_050 Hb_000260_570--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_000260_570--Hb_000617_150 Hb_005162_070--Hb_002027_040 Hb_008695_100 Hb_008695_100 Hb_005162_070--Hb_008695_100 Hb_011030_020 Hb_011030_020 Hb_005162_070--Hb_011030_020 Hb_001140_220 Hb_001140_220 Hb_005162_070--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_005162_070--Hb_013607_040 Hb_001493_180--Hb_001090_050 Hb_001493_180--Hb_005162_070 Hb_001817_020 Hb_001817_020 Hb_001493_180--Hb_001817_020 Hb_001189_050 Hb_001189_050 Hb_001493_180--Hb_001189_050 Hb_001493_180--Hb_011030_020 Hb_004846_070 Hb_004846_070 Hb_001090_050--Hb_004846_070 Hb_011242_040 Hb_011242_040 Hb_001090_050--Hb_011242_040 Hb_000865_060 Hb_000865_060 Hb_001090_050--Hb_000865_060 Hb_001090_050--Hb_005162_070 Hb_020805_130 Hb_020805_130 Hb_002027_040--Hb_020805_130 Hb_004079_030 Hb_004079_030 Hb_002027_040--Hb_004079_030 Hb_000567_120 Hb_000567_120 Hb_002027_040--Hb_000567_120 Hb_148113_010 Hb_148113_010 Hb_002027_040--Hb_148113_010 Hb_010608_050--Hb_008695_100 Hb_004607_030 Hb_004607_030 Hb_010608_050--Hb_004607_030 Hb_010608_050--Hb_011030_020 Hb_010608_050--Hb_000617_150 Hb_001699_130 Hb_001699_130 Hb_010608_050--Hb_001699_130 Hb_011534_030 Hb_011534_030 Hb_010608_050--Hb_011534_030 Hb_000120_680 Hb_000120_680 Hb_000617_150--Hb_000120_680 Hb_000617_150--Hb_001699_130 Hb_172932_010 Hb_172932_010 Hb_000617_150--Hb_172932_010 Hb_000617_150--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_000617_150--Hb_001454_190 Hb_000617_150--Hb_008695_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56888 2.34953 1.43232 4.42235 4.56848 4.42032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.33852 8.71638 16.0663 3.67073 5.76983

CAGE analysis