Hb_000865_060

Information

Type transcription factor
Description TF Family: FAR1
Location Contig865: 87142-92136
Sequence    

Annotation

kegg
ID crb:CARUB_v10022618mg
description hypothetical protein
nr
ID KDO66406.1
description hypothetical protein CISIN_1g043648mg [Citrus sinensis]
swissprot
ID Q9ZVC9
description Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2
trembl
ID A0A067FT83
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043648mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000865_060 0.0 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
2 Hb_007416_270 0.0905776966 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
3 Hb_001090_050 0.0951448032 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
4 Hb_001002_030 0.1055148678 - - PREDICTED: uncharacterized protein LOC105643537 [Jatropha curcas]
5 Hb_005188_090 0.1121470595 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
6 Hb_011242_040 0.1139573913 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
7 Hb_168773_010 0.1173690495 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_002603_160 0.1207213974 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
9 Hb_007632_220 0.1225318376 - - RNA-binding protein, putative [Ricinus communis]
10 Hb_000836_530 0.1231605855 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
11 Hb_001454_190 0.1264215979 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
12 Hb_002551_020 0.1264423542 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
13 Hb_005043_010 0.1268696188 - - calcium ion binding protein, putative [Ricinus communis]
14 Hb_172932_010 0.1269848597 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000563_550 0.1272060848 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
16 Hb_015198_020 0.1278429728 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000260_570 0.1309447796 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_011534_030 0.1322436048 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
19 Hb_000574_390 0.1326298327 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
20 Hb_000002_050 0.1341142883 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]

Gene co-expression network

sample Hb_000865_060 Hb_000865_060 Hb_007416_270 Hb_007416_270 Hb_000865_060--Hb_007416_270 Hb_001090_050 Hb_001090_050 Hb_000865_060--Hb_001090_050 Hb_001002_030 Hb_001002_030 Hb_000865_060--Hb_001002_030 Hb_005188_090 Hb_005188_090 Hb_000865_060--Hb_005188_090 Hb_011242_040 Hb_011242_040 Hb_000865_060--Hb_011242_040 Hb_168773_010 Hb_168773_010 Hb_000865_060--Hb_168773_010 Hb_007416_270--Hb_001002_030 Hb_000236_140 Hb_000236_140 Hb_007416_270--Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_007416_270--Hb_003687_100 Hb_000479_130 Hb_000479_130 Hb_007416_270--Hb_000479_130 Hb_008695_210 Hb_008695_210 Hb_007416_270--Hb_008695_210 Hb_001493_180 Hb_001493_180 Hb_001090_050--Hb_001493_180 Hb_004846_070 Hb_004846_070 Hb_001090_050--Hb_004846_070 Hb_000260_570 Hb_000260_570 Hb_001090_050--Hb_000260_570 Hb_001090_050--Hb_011242_040 Hb_005162_070 Hb_005162_070 Hb_001090_050--Hb_005162_070 Hb_001002_030--Hb_008695_210 Hb_000907_080 Hb_000907_080 Hb_001002_030--Hb_000907_080 Hb_005532_060 Hb_005532_060 Hb_001002_030--Hb_005532_060 Hb_164926_030 Hb_164926_030 Hb_001002_030--Hb_164926_030 Hb_000172_560 Hb_000172_560 Hb_005188_090--Hb_000172_560 Hb_002603_160 Hb_002603_160 Hb_005188_090--Hb_002603_160 Hb_005188_090--Hb_000236_140 Hb_005043_010 Hb_005043_010 Hb_005188_090--Hb_005043_010 Hb_005188_090--Hb_007416_270 Hb_005188_090--Hb_003687_100 Hb_000574_390 Hb_000574_390 Hb_011242_040--Hb_000574_390 Hb_001140_220 Hb_001140_220 Hb_011242_040--Hb_001140_220 Hb_015198_020 Hb_015198_020 Hb_011242_040--Hb_015198_020 Hb_000047_030 Hb_000047_030 Hb_011242_040--Hb_000047_030 Hb_001258_040 Hb_001258_040 Hb_011242_040--Hb_001258_040 Hb_000258_270 Hb_000258_270 Hb_011242_040--Hb_000258_270 Hb_002551_020 Hb_002551_020 Hb_168773_010--Hb_002551_020 Hb_010436_060 Hb_010436_060 Hb_168773_010--Hb_010436_060 Hb_005117_010 Hb_005117_010 Hb_168773_010--Hb_005117_010 Hb_011671_220 Hb_011671_220 Hb_168773_010--Hb_011671_220 Hb_001623_510 Hb_001623_510 Hb_168773_010--Hb_001623_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40075 1.03813 0.371837 0.641656 2.17559 2.97739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.05755 2.66313 6.07626 1.7616 2.79307

CAGE analysis