Hb_004846_070

Information

Type -
Description -
Location Contig4846: 101804-103708
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09190g
description POPTRDRAFT_560820; hypothetical protein
nr
ID XP_011019226.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
swissprot
ID Q9LUC2
description Pentatricopeptide repeat-containing protein At3g14730 OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1
trembl
ID B9HC46
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s09190g PE=4 SV=2
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g14730

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44917: 103042-103537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004846_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
2 Hb_000206_240 0.0695086367 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001090_050 0.0787851163 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
4 Hb_013607_040 0.0804810001 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
5 Hb_000002_050 0.0807974697 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
6 Hb_002307_170 0.0887867876 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
7 Hb_008695_100 0.0889564461 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
8 Hb_000723_080 0.0897089755 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
9 Hb_001140_220 0.0898089812 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000258_270 0.090724441 - - PREDICTED: cullin-3A [Jatropha curcas]
11 Hb_011242_040 0.09239774 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
12 Hb_010608_050 0.0924949161 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
13 Hb_002585_020 0.0927951787 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Populus euphratica]
14 Hb_001373_180 0.0930711992 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
15 Hb_004052_090 0.0954411369 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
16 Hb_016901_010 0.0955471245 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
17 Hb_004374_070 0.0957111312 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
18 Hb_001959_190 0.0985992897 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
19 Hb_007483_100 0.1008295802 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
20 Hb_005162_070 0.1011292559 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004846_070 Hb_004846_070 Hb_000206_240 Hb_000206_240 Hb_004846_070--Hb_000206_240 Hb_001090_050 Hb_001090_050 Hb_004846_070--Hb_001090_050 Hb_013607_040 Hb_013607_040 Hb_004846_070--Hb_013607_040 Hb_000002_050 Hb_000002_050 Hb_004846_070--Hb_000002_050 Hb_002307_170 Hb_002307_170 Hb_004846_070--Hb_002307_170 Hb_008695_100 Hb_008695_100 Hb_004846_070--Hb_008695_100 Hb_004052_090 Hb_004052_090 Hb_000206_240--Hb_004052_090 Hb_000107_420 Hb_000107_420 Hb_000206_240--Hb_000107_420 Hb_000213_100 Hb_000213_100 Hb_000206_240--Hb_000213_100 Hb_000258_270 Hb_000258_270 Hb_000206_240--Hb_000258_270 Hb_007483_100 Hb_007483_100 Hb_000206_240--Hb_007483_100 Hb_001493_180 Hb_001493_180 Hb_001090_050--Hb_001493_180 Hb_000260_570 Hb_000260_570 Hb_001090_050--Hb_000260_570 Hb_011242_040 Hb_011242_040 Hb_001090_050--Hb_011242_040 Hb_000865_060 Hb_000865_060 Hb_001090_050--Hb_000865_060 Hb_005162_070 Hb_005162_070 Hb_001090_050--Hb_005162_070 Hb_019263_020 Hb_019263_020 Hb_013607_040--Hb_019263_020 Hb_013607_040--Hb_002307_170 Hb_001373_180 Hb_001373_180 Hb_013607_040--Hb_001373_180 Hb_002235_280 Hb_002235_280 Hb_013607_040--Hb_002235_280 Hb_013607_040--Hb_005162_070 Hb_001454_190 Hb_001454_190 Hb_000002_050--Hb_001454_190 Hb_007747_200 Hb_007747_200 Hb_000002_050--Hb_007747_200 Hb_016901_010 Hb_016901_010 Hb_000002_050--Hb_016901_010 Hb_000019_130 Hb_000019_130 Hb_000002_050--Hb_000019_130 Hb_000002_050--Hb_001373_180 Hb_011534_030 Hb_011534_030 Hb_002307_170--Hb_011534_030 Hb_000479_140 Hb_000479_140 Hb_002307_170--Hb_000479_140 Hb_001014_230 Hb_001014_230 Hb_002307_170--Hb_001014_230 Hb_000471_110 Hb_000471_110 Hb_002307_170--Hb_000471_110 Hb_000723_080 Hb_000723_080 Hb_008695_100--Hb_000723_080 Hb_000567_120 Hb_000567_120 Hb_008695_100--Hb_000567_120 Hb_008695_100--Hb_005162_070 Hb_010608_050 Hb_010608_050 Hb_008695_100--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_008695_100--Hb_000617_150 Hb_008695_100--Hb_002235_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.53621 1.75967 0.411256 1.14371 1.25116 2.18696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.45324 2.99917 4.47276 1.42507 2.13603

CAGE analysis