Hb_002235_280

Information

Type -
Description -
Location Contig2235: 228386-233294
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12200g
description POPTRDRAFT_808938; pentatricopeptide repeat-containing family protein
nr
ID XP_012084729.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
swissprot
ID Q9LXF2
description Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
trembl
ID B9IK04
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0017s12200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23230: 231617-231741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_280 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
2 Hb_019263_020 0.066344536 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
3 Hb_000072_080 0.0673915168 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
4 Hb_000617_150 0.0760256696 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
5 Hb_008695_100 0.0769075411 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
6 Hb_001140_220 0.0769272826 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_013607_040 0.0783449114 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
8 Hb_172932_010 0.0818468384 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000723_080 0.0823873013 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
10 Hb_011534_030 0.0841704617 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
11 Hb_005162_070 0.087006581 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003053_020 0.0880213698 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
13 Hb_000230_510 0.0888654773 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
14 Hb_010608_050 0.0900098437 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
15 Hb_000120_680 0.0915868547 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
16 Hb_006117_070 0.0947441285 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
17 Hb_016901_010 0.0962633921 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
18 Hb_007645_080 0.0966252027 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
19 Hb_002056_060 0.0972518203 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
20 Hb_001083_020 0.0977781438 - - -

Gene co-expression network

sample Hb_002235_280 Hb_002235_280 Hb_019263_020 Hb_019263_020 Hb_002235_280--Hb_019263_020 Hb_000072_080 Hb_000072_080 Hb_002235_280--Hb_000072_080 Hb_000617_150 Hb_000617_150 Hb_002235_280--Hb_000617_150 Hb_008695_100 Hb_008695_100 Hb_002235_280--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_002235_280--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_002235_280--Hb_013607_040 Hb_019263_020--Hb_013607_040 Hb_003053_020 Hb_003053_020 Hb_019263_020--Hb_003053_020 Hb_002284_200 Hb_002284_200 Hb_019263_020--Hb_002284_200 Hb_011534_030 Hb_011534_030 Hb_019263_020--Hb_011534_030 Hb_000373_130 Hb_000373_130 Hb_019263_020--Hb_000373_130 Hb_012753_160 Hb_012753_160 Hb_000072_080--Hb_012753_160 Hb_138585_060 Hb_138585_060 Hb_000072_080--Hb_138585_060 Hb_021409_030 Hb_021409_030 Hb_000072_080--Hb_021409_030 Hb_001143_080 Hb_001143_080 Hb_000072_080--Hb_001143_080 Hb_000120_680 Hb_000120_680 Hb_000072_080--Hb_000120_680 Hb_000617_150--Hb_000120_680 Hb_001699_130 Hb_001699_130 Hb_000617_150--Hb_001699_130 Hb_172932_010 Hb_172932_010 Hb_000617_150--Hb_172932_010 Hb_000617_150--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_000617_150--Hb_001454_190 Hb_000617_150--Hb_008695_100 Hb_000723_080 Hb_000723_080 Hb_008695_100--Hb_000723_080 Hb_000567_120 Hb_000567_120 Hb_008695_100--Hb_000567_120 Hb_005162_070 Hb_005162_070 Hb_008695_100--Hb_005162_070 Hb_010608_050 Hb_010608_050 Hb_008695_100--Hb_010608_050 Hb_001140_220--Hb_000567_120 Hb_011242_040 Hb_011242_040 Hb_001140_220--Hb_011242_040 Hb_000258_270 Hb_000258_270 Hb_001140_220--Hb_000258_270 Hb_001140_220--Hb_008695_100 Hb_001140_220--Hb_000723_080 Hb_002307_170 Hb_002307_170 Hb_013607_040--Hb_002307_170 Hb_001373_180 Hb_001373_180 Hb_013607_040--Hb_001373_180 Hb_004846_070 Hb_004846_070 Hb_013607_040--Hb_004846_070 Hb_013607_040--Hb_005162_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.12329 1.39588 0.779497 1.24363 1.49555 2.45248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.64133 5.29766 5.32744 1.55102 2.23132

CAGE analysis