Hb_011242_040

Information

Type transcription factor
Description TF Family: ARID
Location Contig11242: 44115-48264
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16250g
description POPTRDRAFT_644482; hypothetical protein
nr
ID XP_012083354.1
description PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q84JT7
description AT-rich interactive domain-containing protein 1 OS=Arabidopsis thaliana GN=ARID1 PE=2 SV=1
trembl
ID A0A067K8K6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14376 PE=4 SV=1
Gene Ontology
ID GO:0003677
description at-rich interactive domain-containing protein 1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03828: 44276-44477 , PASA_asmbl_03829: 47191-47475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011242_040 0.0 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
2 Hb_000574_390 0.0743328062 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
3 Hb_001140_220 0.0746326406 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_015198_020 0.0830969844 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000047_030 0.0898851263 - - tfiif-alpha, putative [Ricinus communis]
6 Hb_001258_040 0.0903949607 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
7 Hb_000258_270 0.0906394348 - - PREDICTED: cullin-3A [Jatropha curcas]
8 Hb_004846_070 0.09239774 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
9 Hb_001090_050 0.0945277038 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
10 Hb_003142_020 0.0970073743 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
11 Hb_004052_090 0.0970829277 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
12 Hb_002678_020 0.0993178002 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
13 Hb_000723_080 0.0995292683 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
14 Hb_008695_210 0.1001371783 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
15 Hb_000631_080 0.100327995 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
16 Hb_013405_030 0.1009544728 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001007_060 0.1027007773 - - Transcriptional corepressor SEUSS [Glycine soja]
18 Hb_022693_060 0.102958593 - - -
19 Hb_016901_010 0.1040012468 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
20 Hb_086639_040 0.1046804104 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_011242_040 Hb_011242_040 Hb_000574_390 Hb_000574_390 Hb_011242_040--Hb_000574_390 Hb_001140_220 Hb_001140_220 Hb_011242_040--Hb_001140_220 Hb_015198_020 Hb_015198_020 Hb_011242_040--Hb_015198_020 Hb_000047_030 Hb_000047_030 Hb_011242_040--Hb_000047_030 Hb_001258_040 Hb_001258_040 Hb_011242_040--Hb_001258_040 Hb_000258_270 Hb_000258_270 Hb_011242_040--Hb_000258_270 Hb_013405_030 Hb_013405_030 Hb_000574_390--Hb_013405_030 Hb_000574_390--Hb_015198_020 Hb_000631_080 Hb_000631_080 Hb_000574_390--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000574_390--Hb_086639_040 Hb_000707_050 Hb_000707_050 Hb_000574_390--Hb_000707_050 Hb_000567_120 Hb_000567_120 Hb_001140_220--Hb_000567_120 Hb_002235_280 Hb_002235_280 Hb_001140_220--Hb_002235_280 Hb_001140_220--Hb_000258_270 Hb_008695_100 Hb_008695_100 Hb_001140_220--Hb_008695_100 Hb_000723_080 Hb_000723_080 Hb_001140_220--Hb_000723_080 Hb_015198_020--Hb_000047_030 Hb_015198_020--Hb_013405_030 Hb_003142_020 Hb_003142_020 Hb_015198_020--Hb_003142_020 Hb_001898_160 Hb_001898_160 Hb_015198_020--Hb_001898_160 Hb_000047_030--Hb_000574_390 Hb_000928_210 Hb_000928_210 Hb_000047_030--Hb_000928_210 Hb_000047_030--Hb_013405_030 Hb_004724_080 Hb_004724_080 Hb_000047_030--Hb_004724_080 Hb_000047_030--Hb_001140_220 Hb_022693_060 Hb_022693_060 Hb_001258_040--Hb_022693_060 Hb_000635_250 Hb_000635_250 Hb_001258_040--Hb_000635_250 Hb_001545_120 Hb_001545_120 Hb_001258_040--Hb_001545_120 Hb_000000_250 Hb_000000_250 Hb_001258_040--Hb_000000_250 Hb_000022_250 Hb_000022_250 Hb_001258_040--Hb_000022_250 Hb_007426_030 Hb_007426_030 Hb_001258_040--Hb_007426_030 Hb_004052_090 Hb_004052_090 Hb_000258_270--Hb_004052_090 Hb_000836_040 Hb_000836_040 Hb_000258_270--Hb_000836_040 Hb_000258_270--Hb_000567_120 Hb_000003_250 Hb_000003_250 Hb_000258_270--Hb_000003_250 Hb_016901_010 Hb_016901_010 Hb_000258_270--Hb_016901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.26321 2.51015 0.837621 1.73421 2.811 5.395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.98644 4.76181 7.83624 2.57015 4.65383

CAGE analysis