Hb_022693_060

Information

Type -
Description -
Location Contig22693: 117925-126964
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23555: 117932-118080 , PASA_asmbl_23556: 122404-122612 , PASA_asmbl_23557: 118255-125127 , PASA_asmbl_23561: 127370-127472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022693_060 0.0 - - -
2 Hb_001258_040 0.069170552 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
3 Hb_105123_010 0.0834815007 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
4 Hb_002205_070 0.0845610434 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
5 Hb_000959_260 0.090938741 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
6 Hb_000635_250 0.0916000056 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
7 Hb_000373_280 0.0924564661 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
8 Hb_000236_070 0.0947337109 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000120_730 0.0949016033 - - hypothetical protein POPTR_0005s033002g, partial [Populus trichocarpa]
10 Hb_155159_030 0.0957977762 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
11 Hb_020000_010 0.0966114812 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
12 Hb_025240_040 0.0975416547 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
13 Hb_007441_200 0.0977696197 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
14 Hb_024714_010 0.0987479091 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
15 Hb_000631_080 0.0989037842 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
16 Hb_004619_020 0.1008950776 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000483_200 0.1016530298 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
18 Hb_001545_120 0.1019417551 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
19 Hb_000861_020 0.1020353235 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
20 Hb_011242_040 0.102958593 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_022693_060 Hb_022693_060 Hb_001258_040 Hb_001258_040 Hb_022693_060--Hb_001258_040 Hb_105123_010 Hb_105123_010 Hb_022693_060--Hb_105123_010 Hb_002205_070 Hb_002205_070 Hb_022693_060--Hb_002205_070 Hb_000959_260 Hb_000959_260 Hb_022693_060--Hb_000959_260 Hb_000635_250 Hb_000635_250 Hb_022693_060--Hb_000635_250 Hb_000373_280 Hb_000373_280 Hb_022693_060--Hb_000373_280 Hb_001258_040--Hb_000635_250 Hb_001545_120 Hb_001545_120 Hb_001258_040--Hb_001545_120 Hb_000000_250 Hb_000000_250 Hb_001258_040--Hb_000000_250 Hb_000022_250 Hb_000022_250 Hb_001258_040--Hb_000022_250 Hb_007426_030 Hb_007426_030 Hb_001258_040--Hb_007426_030 Hb_155159_030 Hb_155159_030 Hb_105123_010--Hb_155159_030 Hb_127552_030 Hb_127552_030 Hb_105123_010--Hb_127552_030 Hb_012098_080 Hb_012098_080 Hb_105123_010--Hb_012098_080 Hb_032258_030 Hb_032258_030 Hb_105123_010--Hb_032258_030 Hb_000861_020 Hb_000861_020 Hb_105123_010--Hb_000861_020 Hb_118707_030 Hb_118707_030 Hb_002205_070--Hb_118707_030 Hb_000107_620 Hb_000107_620 Hb_002205_070--Hb_000107_620 Hb_009838_080 Hb_009838_080 Hb_002205_070--Hb_009838_080 Hb_000236_070 Hb_000236_070 Hb_002205_070--Hb_000236_070 Hb_017904_010 Hb_017904_010 Hb_002205_070--Hb_017904_010 Hb_006541_030 Hb_006541_030 Hb_002205_070--Hb_006541_030 Hb_010504_020 Hb_010504_020 Hb_000959_260--Hb_010504_020 Hb_002835_080 Hb_002835_080 Hb_000959_260--Hb_002835_080 Hb_012008_020 Hb_012008_020 Hb_000959_260--Hb_012008_020 Hb_148644_010 Hb_148644_010 Hb_000959_260--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_000959_260--Hb_001489_150 Hb_002477_330 Hb_002477_330 Hb_000959_260--Hb_002477_330 Hb_000635_250--Hb_001545_120 Hb_002044_080 Hb_002044_080 Hb_000635_250--Hb_002044_080 Hb_044728_010 Hb_044728_010 Hb_000635_250--Hb_044728_010 Hb_002725_120 Hb_002725_120 Hb_000635_250--Hb_002725_120 Hb_009767_110 Hb_009767_110 Hb_000635_250--Hb_009767_110 Hb_003226_180 Hb_003226_180 Hb_000373_280--Hb_003226_180 Hb_018838_030 Hb_018838_030 Hb_000373_280--Hb_018838_030 Hb_000345_170 Hb_000345_170 Hb_000373_280--Hb_000345_170 Hb_000373_280--Hb_001545_120 Hb_000120_730 Hb_000120_730 Hb_000373_280--Hb_000120_730 Hb_002890_020 Hb_002890_020 Hb_000373_280--Hb_002890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.64913 2.20667 1.11229 2.153 3.1119 7.06746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.38101 5.9829 5.02511 3.13796 4.7676

CAGE analysis