Hb_000120_730

Information

Type -
Description -
Location Contig120: 576078-577406
Sequence    

Annotation

kegg
ID pop:POPTR_0005s033002
description hypothetical protein
nr
ID XP_006382558.1
description hypothetical protein POPTR_0005s033002g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GAB0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s033002g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06191: 576230-576780 , PASA_asmbl_06192: 576807-577006 , PASA_asmbl_06193: 578005-578312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_730 0.0 - - hypothetical protein POPTR_0005s033002g, partial [Populus trichocarpa]
2 Hb_000210_180 0.0765937721 - - PREDICTED: protein YLS9-like [Jatropha curcas]
3 Hb_110291_010 0.0800796154 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000373_280 0.0808501645 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
5 Hb_018838_030 0.0856450855 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003878_070 0.0941089566 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
7 Hb_148025_010 0.0942109575 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
8 Hb_022693_060 0.0949016033 - - -
9 Hb_001638_170 0.0958723726 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
10 Hb_000959_260 0.0971923856 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
11 Hb_007441_200 0.0983689626 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
12 Hb_003333_060 0.0985407006 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
13 Hb_154745_010 0.1002011445 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_003525_010 0.1030925377 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
15 Hb_002890_140 0.1033024498 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
16 Hb_005064_060 0.1040267818 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_009133_010 0.1046538884 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
18 Hb_002835_080 0.104849966 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
19 Hb_000085_050 0.104930934 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000656_400 0.1054633595 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_730 Hb_000120_730 Hb_000210_180 Hb_000210_180 Hb_000120_730--Hb_000210_180 Hb_110291_010 Hb_110291_010 Hb_000120_730--Hb_110291_010 Hb_000373_280 Hb_000373_280 Hb_000120_730--Hb_000373_280 Hb_018838_030 Hb_018838_030 Hb_000120_730--Hb_018838_030 Hb_003878_070 Hb_003878_070 Hb_000120_730--Hb_003878_070 Hb_148025_010 Hb_148025_010 Hb_000120_730--Hb_148025_010 Hb_000041_270 Hb_000041_270 Hb_000210_180--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_000210_180--Hb_096563_010 Hb_000210_180--Hb_018838_030 Hb_000656_400 Hb_000656_400 Hb_000210_180--Hb_000656_400 Hb_006332_020 Hb_006332_020 Hb_000210_180--Hb_006332_020 Hb_001242_060 Hb_001242_060 Hb_000210_180--Hb_001242_060 Hb_110291_010--Hb_003878_070 Hb_001638_170 Hb_001638_170 Hb_110291_010--Hb_001638_170 Hb_004143_060 Hb_004143_060 Hb_110291_010--Hb_004143_060 Hb_009218_010 Hb_009218_010 Hb_110291_010--Hb_009218_010 Hb_001014_160 Hb_001014_160 Hb_110291_010--Hb_001014_160 Hb_165928_020 Hb_165928_020 Hb_110291_010--Hb_165928_020 Hb_003226_180 Hb_003226_180 Hb_000373_280--Hb_003226_180 Hb_000373_280--Hb_018838_030 Hb_000345_170 Hb_000345_170 Hb_000373_280--Hb_000345_170 Hb_001545_120 Hb_001545_120 Hb_000373_280--Hb_001545_120 Hb_002890_020 Hb_002890_020 Hb_000373_280--Hb_002890_020 Hb_015292_030 Hb_015292_030 Hb_018838_030--Hb_015292_030 Hb_000032_290 Hb_000032_290 Hb_018838_030--Hb_000032_290 Hb_000085_050 Hb_000085_050 Hb_018838_030--Hb_000085_050 Hb_063090_010 Hb_063090_010 Hb_018838_030--Hb_063090_010 Hb_007441_200 Hb_007441_200 Hb_018838_030--Hb_007441_200 Hb_007575_050 Hb_007575_050 Hb_003878_070--Hb_007575_050 Hb_000334_280 Hb_000334_280 Hb_003878_070--Hb_000334_280 Hb_007054_060 Hb_007054_060 Hb_003878_070--Hb_007054_060 Hb_003525_010 Hb_003525_010 Hb_003878_070--Hb_003525_010 Hb_003125_120 Hb_003125_120 Hb_003878_070--Hb_003125_120 Hb_033594_120 Hb_033594_120 Hb_148025_010--Hb_033594_120 Hb_002835_080 Hb_002835_080 Hb_148025_010--Hb_002835_080 Hb_002477_330 Hb_002477_330 Hb_148025_010--Hb_002477_330 Hb_000009_080 Hb_000009_080 Hb_148025_010--Hb_000009_080 Hb_000671_050 Hb_000671_050 Hb_148025_010--Hb_000671_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.92665 4.14532 2.39001 4.0957 4.89686 10.4819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.61845 10.5853 5.37814 6.63928 5.53733

CAGE analysis