Hb_032258_030

Information

Type -
Description -
Location Contig32258: 11255-18664
Sequence    

Annotation

kegg
ID pop:POPTR_0005s03770g
description RING zinc finger family protein
nr
ID XP_012089085.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
swissprot
ID Q9NS56
description E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1
trembl
ID U5GAG3
description RING zinc finger family protein OS=Populus trichocarpa GN=POPTR_0005s03770g PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase topors

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032258_030 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
2 Hb_155159_030 0.073794294 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
3 Hb_008648_010 0.0758217751 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
4 Hb_105123_010 0.0803979537 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
5 Hb_004097_050 0.082222674 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
6 Hb_009658_020 0.0822864116 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
7 Hb_005306_170 0.082609955 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
8 Hb_127552_030 0.0901858396 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
9 Hb_012675_050 0.0916738143 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002811_130 0.0956432072 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
11 Hb_026549_040 0.0956888169 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
12 Hb_103118_010 0.0965585061 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
13 Hb_000206_210 0.0999247983 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
14 Hb_001662_150 0.1005913837 - - Scaffold attachment factor B1 [Medicago truncatula]
15 Hb_000329_140 0.1012342074 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
16 Hb_011909_100 0.1018647906 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007163_070 0.1025957348 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
18 Hb_000486_010 0.1030780151 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
19 Hb_009838_080 0.1032581153 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
20 Hb_002477_070 0.1037916196 - - Charged multivesicular body protein 2a, putative [Ricinus communis]

Gene co-expression network

sample Hb_032258_030 Hb_032258_030 Hb_155159_030 Hb_155159_030 Hb_032258_030--Hb_155159_030 Hb_008648_010 Hb_008648_010 Hb_032258_030--Hb_008648_010 Hb_105123_010 Hb_105123_010 Hb_032258_030--Hb_105123_010 Hb_004097_050 Hb_004097_050 Hb_032258_030--Hb_004097_050 Hb_009658_020 Hb_009658_020 Hb_032258_030--Hb_009658_020 Hb_005306_170 Hb_005306_170 Hb_032258_030--Hb_005306_170 Hb_127552_030 Hb_127552_030 Hb_155159_030--Hb_127552_030 Hb_155159_030--Hb_105123_010 Hb_015934_070 Hb_015934_070 Hb_155159_030--Hb_015934_070 Hb_025240_040 Hb_025240_040 Hb_155159_030--Hb_025240_040 Hb_001579_220 Hb_001579_220 Hb_155159_030--Hb_001579_220 Hb_002477_070 Hb_002477_070 Hb_008648_010--Hb_002477_070 Hb_000059_370 Hb_000059_370 Hb_008648_010--Hb_000059_370 Hb_012725_050 Hb_012725_050 Hb_008648_010--Hb_012725_050 Hb_005194_010 Hb_005194_010 Hb_008648_010--Hb_005194_010 Hb_001105_030 Hb_001105_030 Hb_008648_010--Hb_001105_030 Hb_105123_010--Hb_127552_030 Hb_012098_080 Hb_012098_080 Hb_105123_010--Hb_012098_080 Hb_000861_020 Hb_000861_020 Hb_105123_010--Hb_000861_020 Hb_022693_060 Hb_022693_060 Hb_105123_010--Hb_022693_060 Hb_000329_140 Hb_000329_140 Hb_004097_050--Hb_000329_140 Hb_008785_040 Hb_008785_040 Hb_004097_050--Hb_008785_040 Hb_035755_010 Hb_035755_010 Hb_004097_050--Hb_035755_010 Hb_012022_070 Hb_012022_070 Hb_004097_050--Hb_012022_070 Hb_000373_280 Hb_000373_280 Hb_004097_050--Hb_000373_280 Hb_002893_080 Hb_002893_080 Hb_009658_020--Hb_002893_080 Hb_000103_080 Hb_000103_080 Hb_009658_020--Hb_000103_080 Hb_009658_020--Hb_155159_030 Hb_001975_140 Hb_001975_140 Hb_009658_020--Hb_001975_140 Hb_009658_020--Hb_001579_220 Hb_005306_170--Hb_012725_050 Hb_001662_150 Hb_001662_150 Hb_005306_170--Hb_001662_150 Hb_028227_020 Hb_028227_020 Hb_005306_170--Hb_028227_020 Hb_001157_020 Hb_001157_020 Hb_005306_170--Hb_001157_020 Hb_005306_170--Hb_000329_140 Hb_000486_010 Hb_000486_010 Hb_005306_170--Hb_000486_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.14946 2.05207 2.87963 2.55181 6.50175 6.16997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.76022 9.66859 5.40684 5.29614 7.38108

CAGE analysis