Hb_000329_140

Information

Type -
Description -
Location Contig329: 70744-76315
Sequence    

Annotation

kegg
ID tcc:TCM_005541
description Methionine aminopeptidase 1A isoform 1
nr
ID XP_012083605.1
description PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
swissprot
ID Q9SLN5
description Methionine aminopeptidase 1A OS=Arabidopsis thaliana GN=MAP1A PE=1 SV=1
trembl
ID A0A067K183
description Methionine aminopeptidase 1 OS=Jatropha curcas GN=JCGZ_14549 PE=3 SV=1
Gene Ontology
ID GO:0008233
description methionine aminopeptidase 1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34500: 70734-71431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_140 0.0 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
2 Hb_002728_070 0.0735020007 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
3 Hb_005306_170 0.0815809646 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
4 Hb_000272_020 0.0851416271 - - oxidoreductase, putative [Ricinus communis]
5 Hb_000365_120 0.0857439222 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
6 Hb_004097_050 0.0874861418 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
7 Hb_007632_030 0.0879684203 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
8 Hb_002141_030 0.0883233498 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000486_010 0.0893959659 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
10 Hb_001662_150 0.0896156256 - - Scaffold attachment factor B1 [Medicago truncatula]
11 Hb_000109_090 0.0911979632 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
12 Hb_003398_130 0.0932139456 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
13 Hb_004310_130 0.0933074008 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
14 Hb_054865_120 0.0940487103 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
15 Hb_005697_060 0.094334581 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
16 Hb_028227_020 0.0945761071 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
17 Hb_003058_040 0.0946524465 - - rotamase, putative [Ricinus communis]
18 Hb_003125_160 0.0947761446 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
19 Hb_007163_070 0.0947934467 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
20 Hb_000086_380 0.0949865471 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000329_140 Hb_000329_140 Hb_002728_070 Hb_002728_070 Hb_000329_140--Hb_002728_070 Hb_005306_170 Hb_005306_170 Hb_000329_140--Hb_005306_170 Hb_000272_020 Hb_000272_020 Hb_000329_140--Hb_000272_020 Hb_000365_120 Hb_000365_120 Hb_000329_140--Hb_000365_120 Hb_004097_050 Hb_004097_050 Hb_000329_140--Hb_004097_050 Hb_007632_030 Hb_007632_030 Hb_000329_140--Hb_007632_030 Hb_000025_470 Hb_000025_470 Hb_002728_070--Hb_000025_470 Hb_054865_120 Hb_054865_120 Hb_002728_070--Hb_054865_120 Hb_000058_100 Hb_000058_100 Hb_002728_070--Hb_000058_100 Hb_027472_150 Hb_027472_150 Hb_002728_070--Hb_027472_150 Hb_004310_130 Hb_004310_130 Hb_002728_070--Hb_004310_130 Hb_012725_050 Hb_012725_050 Hb_005306_170--Hb_012725_050 Hb_001662_150 Hb_001662_150 Hb_005306_170--Hb_001662_150 Hb_028227_020 Hb_028227_020 Hb_005306_170--Hb_028227_020 Hb_001157_020 Hb_001157_020 Hb_005306_170--Hb_001157_020 Hb_000486_010 Hb_000486_010 Hb_005306_170--Hb_000486_010 Hb_002253_100 Hb_002253_100 Hb_000272_020--Hb_002253_100 Hb_001579_270 Hb_001579_270 Hb_000272_020--Hb_001579_270 Hb_000103_080 Hb_000103_080 Hb_000272_020--Hb_000103_080 Hb_000003_080 Hb_000003_080 Hb_000272_020--Hb_000003_080 Hb_020581_010 Hb_020581_010 Hb_000272_020--Hb_020581_010 Hb_009421_020 Hb_009421_020 Hb_000365_120--Hb_009421_020 Hb_000365_120--Hb_007632_030 Hb_001390_110 Hb_001390_110 Hb_000365_120--Hb_001390_110 Hb_002141_030 Hb_002141_030 Hb_000365_120--Hb_002141_030 Hb_156973_010 Hb_156973_010 Hb_000365_120--Hb_156973_010 Hb_005697_060 Hb_005697_060 Hb_000365_120--Hb_005697_060 Hb_032258_030 Hb_032258_030 Hb_004097_050--Hb_032258_030 Hb_008785_040 Hb_008785_040 Hb_004097_050--Hb_008785_040 Hb_035755_010 Hb_035755_010 Hb_004097_050--Hb_035755_010 Hb_012022_070 Hb_012022_070 Hb_004097_050--Hb_012022_070 Hb_000373_280 Hb_000373_280 Hb_004097_050--Hb_000373_280 Hb_007632_030--Hb_009421_020 Hb_007632_030--Hb_156973_010 Hb_004841_010 Hb_004841_010 Hb_007632_030--Hb_004841_010 Hb_000120_790 Hb_000120_790 Hb_007632_030--Hb_000120_790 Hb_023386_020 Hb_023386_020 Hb_007632_030--Hb_023386_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.93233 1.04767 1.67016 1.08445 2.29439 2.78325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.67487 3.03153 1.37094 2.24888 2.25053

CAGE analysis